RetrogeneDB ID: | retro_itri_1742 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393709.1:528822..529430(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS5 | ||
Ensembl ID: | ENSSTOG00000005935 | ||
Aliases: | None | ||
Description: | ribosomal protein S5 [Source:HGNC Symbol;Acc:10426] |
Percent Identity: | 84.8 % |
Parental protein coverage: | 99.51 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVE |
M.EWETA.PAVAETPDIKLF.KWSTDDVQINDI.LQDY.AVKEK.AKYLPHSA..YAAKRF.KAQCPI.E | |
Retrocopy | MMEWETAEPAVAETPDIKLFRKWSTDDVQINDIFLQDYVAVKEKFAKYLPHSAECYAAKRFCKAQCPIME |
Parental | RLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVD |
RLTNSMMMHG.NNGKK.MTV.I.KHAFEIIHLLTGENPLQVL.NAIINSGP..DST.IG.AGTVRRQAVD | |
Retrocopy | RLTNSMMMHGHNNGKKFMTVHIIKHAFEIIHLLTGENPLQVLMNAIINSGPQKDST*IG*AGTVRRQAVD |
Parental | VSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELE-RVAKSN |
VSPL..VNQA.WLLCTGARE..F.NIK.IAECLADELINA.KGSSN.YAIKKK.ELE..VAKSN | |
Retrocopy | VSPLLCVNQATWLLCTGAREVDFLNIKMIAECLADELINASKGSSNFYAIKKKEELE<AVAKSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000002366 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000000304 | 6 retrocopies | |
Echinops telfairi | ENSETEG00000013543 | 1 retrocopy | |
Homo sapiens | ENSG00000083845 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000004258 | 4 retrocopies | |
Macropus eugenii | ENSMEUG00000015400 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000012641 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000008729 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000008308 | 1 retrocopy | |
Ornithorhynchus anatinus | ENSOANG00000011921 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013088 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000011034 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000010500 | 7 retrocopies | |
Pan troglodytes | ENSPTRG00000011591 | 6 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000005935 | 1 retrocopy |
retro_itri_1742 ,
|
Tupaia belangeri | ENSTBEG00000016955 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000000076 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000001991 | 1 retrocopy |