RetrogeneDB ID: | retro_cjac_599 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 1:106551790..106552266(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS5 | ||
Ensembl ID: | ENSCJAG00000000304 | ||
Aliases: | None | ||
Description: | ribosomal protein S5 [Source:HGNC Symbol;Acc:10426] |
Percent Identity: | 69.75 % |
Parental protein coverage: | 78.92 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MTEWETAAPAVAETPDI-KLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIV |
MT.WETA.P.VAETP.I..LFGKWSTDD.QIND.SLQDYI.V..KYAKYLPHSAG..AAK.F.K.QCPI. | |
Retrocopy | MTKWETATPEVAETPNI<QLFGKWSTDDGQINDMSLQDYISVR-KYAKYLPHSAGQCAAKHFHKTQCPIM |
Parental | ERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAV |
E.LT.SMM.HG.N..KK.MT...VKHAFE.IHL...EN.LQVLVNA.INS...E.ST.IGRA.T.R...V | |
Retrocopy | EHLTTSMMKHGHNHDKKPMTMHTVKHAFELIHLPKSENTLQVLVNA-INSDLWEVSTCIGRAKTTR*HTV |
Parental | DVSPLRRVNQAIWLLCTGAREA |
.VSPL...NQAIWLLCTG..EA | |
Retrocopy | AVSPLHSMNQAIWLLCTGTCEA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 87 .24 RPM |
SRP051959_heart | 0 .00 RPM | 62 .78 RPM |
SRP051959_kidney | 0 .00 RPM | 52 .71 RPM |
SRP051959_liver | 0 .00 RPM | 101 .91 RPM |
SRP051959_lung | 0 .00 RPM | 73 .32 RPM |
SRP051959_lymph_node | 0 .00 RPM | 123 .97 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 112 .09 RPM |
SRP051959_spleen | 0 .00 RPM | 104 .37 RPM |