RetrogeneDB ID: | retro_hsap_3649 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 6:116579696..116580278(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000233558 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS5 | ||
Ensembl ID: | ENSG00000083845 | ||
Aliases: | RPS5, S5 | ||
Description: | ribosomal protein S5 [Source:HGNC Symbol;Acc:10426] |
Percent Identity: | 94.85 % |
Parental protein coverage: | 97. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVE |
MTEWETAAPAVAETPDIKLFGKWSTDDV.I.DISLQDYIAVKEKYAKYLPHSAG.YAAK.F.KAQCPIVE | |
Retrocopy | MTEWETAAPAVAETPDIKLFGKWSTDDVHISDISLQDYIAVKEKYAKYLPHSAGWYAAKCFHKAQCPIVE |
Parental | RLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVD |
RLTNSMMMHG.NNGKKLMTV.IVKHAFE.IHLLTGENPLQVLVNAIINSGPREDSTRIG.AGTVRRQAVD | |
Retrocopy | RLTNSMMMHGCNNGKKLMTVCIVKHAFEVIHLLTGENPLQVLVNAIINSGPREDSTRIGCAGTVRRQAVD |
Parental | VSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD |
VSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLA.ELINAAKGSSNSYAIKKKD | |
Retrocopy | VSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLAEELINAAKGSSNSYAIKKKD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .40 RPM | 249 .17 RPM |
bodymap2_adrenal | 0 .20 RPM | 279 .29 RPM |
bodymap2_brain | 0 .35 RPM | 59 .63 RPM |
bodymap2_breast | 0 .51 RPM | 186 .71 RPM |
bodymap2_colon | 0 .17 RPM | 374 .15 RPM |
bodymap2_heart | 0 .31 RPM | 83 .35 RPM |
bodymap2_kidney | 0 .27 RPM | 138 .43 RPM |
bodymap2_liver | 0 .21 RPM | 138 .78 RPM |
bodymap2_lung | 0 .35 RPM | 323 .07 RPM |
bodymap2_lymph_node | 0 .53 RPM | 384 .86 RPM |
bodymap2_ovary | 1 .02 RPM | 416 .21 RPM |
bodymap2_prostate | 0 .38 RPM | 457 .87 RPM |
bodymap2_skeletal_muscle | 0 .22 RPM | 239 .88 RPM |
bodymap2_testis | 0 .98 RPM | 195 .62 RPM |
bodymap2_thyroid | 0 .81 RPM | 197 .43 RPM |
bodymap2_white_blood_cells | 0 .16 RPM | 395 .35 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_158162 | 473 libraries | 765 libraries | 551 libraries | 27 libraries | 13 libraries |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_2465 |
Pongo abelii | retro_pabe_2996 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000002366 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000000304 | 6 retrocopies | |
Echinops telfairi | ENSETEG00000013543 | 1 retrocopy | |
Homo sapiens | ENSG00000083845 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000004258 | 4 retrocopies | |
Macropus eugenii | ENSMEUG00000015400 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000012641 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000008729 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000008308 | 1 retrocopy | |
Ornithorhynchus anatinus | ENSOANG00000011921 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013088 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000011034 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000010500 | 7 retrocopies | |
Pan troglodytes | ENSPTRG00000011591 | 6 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000005935 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000016955 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000000076 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000001991 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .86 RPM |
CEU_NA11843 | 1 .14 RPM |
CEU_NA11930 | 1 .24 RPM |
CEU_NA12004 | 0 .72 RPM |
CEU_NA12400 | 1 .16 RPM |
CEU_NA12751 | 1 .04 RPM |
CEU_NA12760 | 1 .12 RPM |
CEU_NA12827 | 0 .85 RPM |
CEU_NA12872 | 0 .82 RPM |
CEU_NA12873 | 0 .77 RPM |
FIN_HG00183 | 1 .18 RPM |
FIN_HG00277 | 1 .00 RPM |
FIN_HG00315 | 1 .02 RPM |
FIN_HG00321 | 0 .97 RPM |
FIN_HG00328 | 0 .80 RPM |
FIN_HG00338 | 0 .75 RPM |
FIN_HG00349 | 0 .94 RPM |
FIN_HG00375 | 0 .93 RPM |
FIN_HG00377 | 1 .16 RPM |
FIN_HG00378 | 0 .70 RPM |
GBR_HG00099 | 0 .78 RPM |
GBR_HG00111 | 1 .01 RPM |
GBR_HG00114 | 0 .89 RPM |
GBR_HG00119 | 0 .98 RPM |
GBR_HG00131 | 1 .21 RPM |
GBR_HG00133 | 0 .48 RPM |
GBR_HG00134 | 1 .29 RPM |
GBR_HG00137 | 1 .13 RPM |
GBR_HG00142 | 0 .56 RPM |
GBR_HG00143 | 0 .73 RPM |
TSI_NA20512 | 0 .76 RPM |
TSI_NA20513 | 0 .80 RPM |
TSI_NA20518 | 1 .00 RPM |
TSI_NA20532 | 0 .82 RPM |
TSI_NA20538 | 1 .06 RPM |
TSI_NA20756 | 0 .64 RPM |
TSI_NA20765 | 0 .79 RPM |
TSI_NA20771 | 0 .74 RPM |
TSI_NA20786 | 0 .60 RPM |
TSI_NA20798 | 0 .87 RPM |
YRI_NA18870 | 1 .15 RPM |
YRI_NA18907 | 0 .83 RPM |
YRI_NA18916 | 1 .07 RPM |
YRI_NA19093 | 0 .60 RPM |
YRI_NA19099 | 0 .77 RPM |
YRI_NA19114 | 0 .71 RPM |
YRI_NA19118 | 0 .81 RPM |
YRI_NA19213 | 0 .53 RPM |
YRI_NA19214 | 0 .74 RPM |
YRI_NA19223 | 0 .74 RPM |