RetrogeneDB ID: | retro_dnov_75 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_1292:6220..6784(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENO3 | ||
Ensembl ID: | ENSDNOG00000011654 | ||
Aliases: | None | ||
Description: | enolase 3 (beta, muscle) [Source:HGNC Symbol;Acc:3354] |
Percent Identity: | 63.37 % |
Parental protein coverage: | 52.01 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 8 |
Parental | VCKAGAAEKGVPLYRHIADLAGN-PDLVLPVPAF-NVINGGSHAGNK-LAMQEFMILPVGASSFKEAMRI |
VCKAGAA.KG..L..HIADL.GN.PD.VLPV..F...IN.GS.AGNK..A.QEF..LP.G.SSF.EAM.. | |
Retrocopy | VCKAGAAKKGIQLSWHIADLPGN<PDSVLPVAIF>RGINTGSCAGNK<AANQEFTALPMGTSSFSEAMHM |
Parental | GAEVYHHLKGVIKA-KYGKDATNVGDE-GGFAPNILENNEAL-ELLKTAIQAAGYPDKVVIGMDVAASEF |
GAE.YHHL.GVIKA...GKDATNVG...G.F....LE.NEAL..LLKTA.QAAG.P..VVI..D.AAS.F | |
Retrocopy | GAELYHHLNGVIKA<PHGKDATNVGVG<GDFTLAVLE-NEAL<GLLKTATQAAGHPNNVVISSDMAASGF |
Parental | YR-NGKYDLDFKSPDDPARHISGEKL-GDLYKSFIKNYPVVSIEDPFDQDDWATWTSFLTGV |
...NGKYDLDF.SP..P...I.GE.L.G.LYKSFIK.YPVVSIE.......WA...SFLTG. | |
Retrocopy | VG<NGKYDLDFVSPGGPTCYITGERL<GELYKSFIKSYPVVSIEGNL*RNEWA---SFLTGL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 23 .73 RPM |
SRP012922_cerebellum | 0 .00 RPM | 17 .18 RPM |
SRP012922_heart | 0 .00 RPM | 1074 .31 RPM |
SRP012922_kidney | 0 .00 RPM | 9 .86 RPM |
SRP012922_liver | 0 .00 RPM | 2 .94 RPM |
SRP012922_lung | 0 .00 RPM | 52 .23 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 4677 .95 RPM |
SRP012922_spleen | 0 .00 RPM | 8 .47 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000011679 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011654 | 2 retrocopies |
retro_dnov_1712, retro_dnov_75 ,
|
Macropus eugenii | ENSMEUG00000007915 | 25 retrocopies |
retro_meug_1019, retro_meug_1341, retro_meug_1483, retro_meug_1540, retro_meug_1566, retro_meug_1605, retro_meug_170, retro_meug_1701, retro_meug_1743, retro_meug_1869, retro_meug_1905, retro_meug_1929, retro_meug_2026, retro_meug_2190, retro_meug_235, retro_meug_269, retro_meug_578, retro_meug_607, retro_meug_637, retro_meug_803, retro_meug_820, retro_meug_906, retro_meug_965, retro_meug_973, retro_meug_976,
|
Rattus norvegicus | ENSRNOG00000004078 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002346 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000007066 | 7 retrocopies |