RetrogeneDB ID: | retro_meug_2190 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold99997:3182..4479(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENO3 | ||
Ensembl ID: | ENSMEUG00000007915 | ||
Aliases: | None | ||
Description: | enolase 3 (beta, muscle) [Source:HGNC Symbol;Acc:3354] |
Percent Identity: | 69.43 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 7 |
Number of frameshifts detected | 1 |
Parental | MAMQKIFAREILDSRGNPTVEVDLHTAKGRFRAAVPSGASTGIYEALELRDGDKSRYLGKGVLXXXXXXX |
M...KI.AREI..S.GNPT.EVDL...KG.F.AAVPSGASTG..EALEL.D.DK..Y.GK.V........ | |
Retrocopy | MSVYKI*AREIFASCGNPTLEVDL*AEKGHF*AAVPSGASTGLHEALELQDNDKTHYMGKSVSKAVEHIN |
Parental | XXXXXXXXXXKLSVVDQEKVDKFMIELDGTENKSKFGANAILGVSLAVCKAGAAEKGVPLYRHIADLAGN |
..........KL.VV.QE..DK.MIE.DGTENKSKFGANAILGVSLAVCKAGAAEKGV.LYRH..DLAGN | |
Retrocopy | KTVASTLISKKLNVVEQE-IDKLMIEMDGTENKSKFGANAILGVSLAVCKAGAAEKGVSLYRHVTDLAGN |
Parental | PDLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGAASFREAMRIGAEVY-HHLKGVIKSKYGKDATNVGD |
....LPVP.F.VI.GGSHA.NKLA.Q.F.ILPVGAA.F.EAM.IG.EVY.H.LK.V.K.KYG.DATN.GD | |
Retrocopy | DEVILPVPVFSVISGGSHASNKLATQKFKILPVGAADFKEAMLIGHEVY>HNLKSVMKQKYGQDATNIGD |
Parental | EGGFAPNILENNEALELLKTAIQAAGYPDKVVIGMDVAASEFYKNGKYDLDFKSPDDPARHISGEKLGEL |
E.GFAP.ILEN.E.L.LLK.AI..A.Y..KV.IGMDVAAS.F...GKYDLDFKSPDD..R.I....LG.L | |
Retrocopy | ESGFAPDILENKEVLDLLKNAIGKADYTNKVIIGMDVAAS*FF*SGKYDLDFKSPDDSNRYIFPSELGDL |
Parental | YKSFIKNYPVVSIEDPFDQDDWATWTKFLSGVDIQIVGDDLTVTNPKRIAQAVEKRACNCLLLKVNQIGS |
Y.SFIK.YPVVSIEDPFDQDD...W..F...V.IQ.VGDD.TVTNPKRI..A..K..C.CLLLKVNQIGS | |
Retrocopy | YRSFIKDYPVVSIEDPFDQDD*EAWKNFTATVGIQVVGDDFTVTNPKRIEKALNK-TCSCLLLKVNQIGS |
Parental | VTESIQACKLAQTNGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEALGD |
.TES.QACKLAQ.N.W..MVSH.SGETEDTFIADLVVGLCT.QIK.G.PC.SE.LAKY.QL.RIEE.LG. | |
Retrocopy | MTESLQACKLAQSNRWSLMVSHHSGETEDTFIADLVVGLCTRQIKIGTPC*SEHLAKYSQLLRIEEELGS |
Parental | KAVFAGRKFRNPKAK |
KA.FAGR.FRNP.AK | |
Retrocopy | KAKFAGRNFRNPQAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000015802 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000011679 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011654 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000005942 | 11 retrocopies | |
Macropus eugenii | ENSMEUG00000007840 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000007915 | 25 retrocopies |
retro_meug_1019, retro_meug_1341, retro_meug_1483, retro_meug_1540, retro_meug_1566, retro_meug_1605, retro_meug_170, retro_meug_1701, retro_meug_1743, retro_meug_1869, retro_meug_1905, retro_meug_1929, retro_meug_2026, retro_meug_2190 , retro_meug_235, retro_meug_269, retro_meug_578, retro_meug_607, retro_meug_637, retro_meug_803, retro_meug_820, retro_meug_906, retro_meug_965, retro_meug_973, retro_meug_976,
|
Rattus norvegicus | ENSRNOG00000004078 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002346 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000007066 | 7 retrocopies |