RetrogeneDB ID: | retro_tsyr_534 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_134752:2252..2915(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTSYG00000003876 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENO3 | ||
Ensembl ID: | ENSTSYG00000007066 | ||
Aliases: | None | ||
Description: | enolase 3 (beta, muscle) [Source:HGNC Symbol;Acc:3354] |
Percent Identity: | 84.62 % |
Parental protein coverage: | 51.28 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | APNILENNEALELLKTAIQAAGYPDKVVIGMDVAASEFYRNGKYDLDFKSPDDPARHITGEKLGELYKSF |
A..ILENNE.LELLK.AIQAAGY.DK.VIG.D..ASE.YRN.KYDLDFK.PDDPARH.TG..LGELYKSF | |
Retrocopy | ALHILENNEVLELLKMAIQAAGYLDKIVIGLDAVASELYRNRKYDLDFKLPDDPARHTTGKELGELYKSF |
Parental | IKNYPVVSIEDPFDQDDWATWTSFLSGVDIQIVGDDLTVTNPKRIAQAVEKKACKCLLLKVNQIGSVTES |
.KNY.VVSIED.FDQDDWATW.S..SGVDIQIV.DDLTVTNPKRIAQAVEKKA.KCLLLKVNQI.SVTES | |
Retrocopy | TKNYTVVSIEDHFDQDDWATWASLFSGVDIQIVDDDLTVTNPKRIAQAVEKKAYKCLLLKVNQIVSVTES |
Parental | IQACKLAQSNGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEALGDKAVF |
IQA.KLA.SNGWGVMVSH.SGETEDTFIADL.VG.CTGQIKTGAPC.SERLA.YNQLMRIEEALGDKAVF | |
Retrocopy | IQAHKLAPSNGWGVMVSHHSGETEDTFIADLTVGFCTGQIKTGAPCHSERLARYNQLMRIEEALGDKAVF |
Parental | AGRKFRNPKAK |
AGRKF.N.K.K | |
Retrocopy | AGRKFHNSKVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000011679 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011654 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000007915 | 25 retrocopies |
retro_meug_1019, retro_meug_1341, retro_meug_1483, retro_meug_1540, retro_meug_1566, retro_meug_1605, retro_meug_170, retro_meug_1701, retro_meug_1743, retro_meug_1869, retro_meug_1905, retro_meug_1929, retro_meug_2026, retro_meug_2190, retro_meug_235, retro_meug_269, retro_meug_578, retro_meug_607, retro_meug_637, retro_meug_803, retro_meug_820, retro_meug_906, retro_meug_965, retro_meug_973, retro_meug_976,
|
Rattus norvegicus | ENSRNOG00000004078 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002346 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000002509 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000007066 | 7 retrocopies |
retro_tsyr_1019, retro_tsyr_1157, retro_tsyr_1626, retro_tsyr_1917, retro_tsyr_2043, retro_tsyr_52, retro_tsyr_534 ,
|