RetrogeneDB ID: | retro_meug_1566 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold46:21177..22011(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENO3 | ||
Ensembl ID: | ENSMEUG00000007915 | ||
Aliases: | None | ||
Description: | enolase 3 (beta, muscle) [Source:HGNC Symbol;Acc:3354] |
Percent Identity: | 63.93 % |
Parental protein coverage: | 64.06 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | SHAGNK-LAMQEFMILPVGAASFREAMRIGAEVYHHLKGVIKSKYGKDATNVGDEGGFAPNILENNEALE |
SHA..K..AMQEFM....GAA.F.EAM.I.AE.Y..LK.VIK.KYG.DATN.GDEG.F.PNI.EN..AL. | |
Retrocopy | SHAVYK>MAMQEFMMFSAGAANFKEAMCIEAEGYPNLKRVIKQKYGQDATNIGDEGSFFPNIRENKKALD |
Parental | LLKTAIQAAGYPDKVVIGMDVAASEFYKNGKYDLDFKSPDDPARHISGEKLGELYKSFIKNYPVVSIEDP |
LLK.AI..AGY.DKVV.G.DVA.SEF...GK.DLDFK.PDD....IS...LG.LYKSFIK.YPV.SI... | |
Retrocopy | LLKNAIGKAGYTDKVVTGLDVATSEFF*SGKHDLDFKFPDDSSIYISSSELGDLYKSFIKDYPVESIKHL |
Parental | FDQDDWATWTKFLSGVDIQIVGDDLTVTNPKRIAQAVEKRACNCLLLKVNQIGSVTESIQA-CKLAQTNG |
FDQDD...W..F.....I...G.DLTVT..K.I..AV.K.A.NCLLLKVNQIGS.TES.QA..KLAQ..G | |
Retrocopy | FDQDDLEAWKNFTATAGI*VAGADLTVTKSKCIEKAVKKKA*NCLLLKVNQIGSMTESLQA<GKLAQFSG |
Parental | WGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEALGDKAVFAGRKFRNPKAK |
WGVMVSH..GETED.FIADLVVGLCTG.IK.G.P..S..L.KY.QL.RIEE....K...AG..FRNP.AK | |
Retrocopy | WGVMVSHCLGETEDAFIADLVVGLCTG*IKSGTPRLSKHLVKYYQLLRIEEEQVSKVKSAGGNFRNPQAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000015802 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000011679 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011654 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000005942 | 11 retrocopies | |
Macropus eugenii | ENSMEUG00000007840 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000007915 | 25 retrocopies |
retro_meug_1019, retro_meug_1341, retro_meug_1483, retro_meug_1540, retro_meug_1566 , retro_meug_1605, retro_meug_170, retro_meug_1701, retro_meug_1743, retro_meug_1869, retro_meug_1905, retro_meug_1929, retro_meug_2026, retro_meug_2190, retro_meug_235, retro_meug_269, retro_meug_578, retro_meug_607, retro_meug_637, retro_meug_803, retro_meug_820, retro_meug_906, retro_meug_965, retro_meug_973, retro_meug_976,
|
Rattus norvegicus | ENSRNOG00000004078 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002346 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000007066 | 7 retrocopies |