RetrogeneDB ID: | retro_tsyr_1157 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_32817:2407..3472(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENO3 | ||
Ensembl ID: | ENSTSYG00000007066 | ||
Aliases: | None | ||
Description: | enolase 3 (beta, muscle) [Source:HGNC Symbol;Acc:3354] |
Percent Identity: | 84.03 % |
Parental protein coverage: | 82.37 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | KKLSVVDQEKVDKFMIELDGTENKSKFGANAILGVSLAVCKAGAAEKGVPLYRHIADLAGNPDLVLPVPA |
KKLS.VDQEKVDKFMIE.DGTENKSKFGANAILG.SLA.CKAG.AEKGVPL..HI.DLAGN.DLVLPV.A | |
Retrocopy | KKLSIVDQEKVDKFMIEQDGTENKSKFGANAILGMSLAMCKAGTAEKGVPL**HITDLAGNSDLVLPVSA |
Parental | FNVINGGSHAGNKLAMQEFMILPVGASSFKEAMRIGAEVYHHLKGVIKAKYGKDATNVGDEGGFAPNILE |
FNVINGGS.A.NK..MQ.FMIL.VGASSFKEAM.IGAEVYHHLKGVIKA.YGK.ATNVGDEGGFAPN.LE | |
Retrocopy | FNVINGGSDAENKQIMQDFMILSVGASSFKEAMCIGAEVYHHLKGVIKANYGKNATNVGDEGGFAPNVLE |
Parental | NNEALELLKTAIQAAGYPDKVVIGMDVAASEFYRNGKYDLDFKSPDDPARHIT-GEKLGELYKSFIKNYP |
NNEAL.LLKTAIQ.AGYP.KV..G.DVAASE.Y.N.KY.LDFKSPDDPARHIT.G..LGELYKSFIKNYP | |
Retrocopy | NNEALGLLKTAIQVAGYPEKVMTGVDVAASELYCNRKYYLDFKSPDDPARHIT>GGELGELYKSFIKNYP |
Parental | VVSIEDPFDQDDWATWTSFLSGVDIQIVGDDLTVTNPKRIAQAVEKKACKCLLLKVNQIGSVTESIQACK |
V.SI.D.FDQDDWATW.SFLSGVD.QI.GDDLT.TNPKRIAQAVEKKAC.CLLLKVNQIGSVTESIQACK | |
Retrocopy | VISIKDSFDQDDWATWASFLSGVDLQIMGDDLTITNPKRIAQAVEKKACNCLLLKVNQIGSVTESIQACK |
Parental | LAQSNGW-GVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEALGDKAVFAGRK |
L.QSNG..GV.VSH.SG.TEDTFIADL.V.LCTGQIKT.AP.RSE.LAKY..LMRI.EALGDKAVFAG.K | |
Retrocopy | LPQSNGG<GVVVSHHSGQTEDTFIADLMVELCTGQIKTCAPYRSECLAKYS*LMRIKEALGDKAVFAGYK |
Parental | FRNPKAK |
F.NPKAK | |
Retrocopy | FHNPKAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000011679 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011654 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000007915 | 25 retrocopies |
retro_meug_1019, retro_meug_1341, retro_meug_1483, retro_meug_1540, retro_meug_1566, retro_meug_1605, retro_meug_170, retro_meug_1701, retro_meug_1743, retro_meug_1869, retro_meug_1905, retro_meug_1929, retro_meug_2026, retro_meug_2190, retro_meug_235, retro_meug_269, retro_meug_578, retro_meug_607, retro_meug_637, retro_meug_803, retro_meug_820, retro_meug_906, retro_meug_965, retro_meug_973, retro_meug_976,
|
Rattus norvegicus | ENSRNOG00000004078 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002346 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000002509 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000007066 | 7 retrocopies |
retro_tsyr_1019, retro_tsyr_1157 , retro_tsyr_1626, retro_tsyr_1917, retro_tsyr_2043, retro_tsyr_52, retro_tsyr_534,
|