RetrogeneDB ID: | retro_meug_637 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold14975:18812..19873(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENO3 | ||
Ensembl ID: | ENSMEUG00000007915 | ||
Aliases: | None | ||
Description: | enolase 3 (beta, muscle) [Source:HGNC Symbol;Acc:3354] |
Percent Identity: | 76.06 % |
Parental protein coverage: | 81.57 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | KLSVVDQEKVDKFMIELDGTENKSKFGANAILGVSLAVCKAGAAEKGVPLYRHIADLAGNPDLVLPVPAF |
KL.VV.Q.K.DK..IE.DGTENKSKFGANAILGVSLAVCKAGAAEKGV..YRHIADLAGN....LP.PAF | |
Retrocopy | KLNVVEQKKTDKLIIEIDGTENKSKFGANAILGVSLAVCKAGAAEKGVSMYRHIADLAGNDEVILPIPAF |
Parental | NVINGGSHAGNKLAMQEFMILPVGAASFREAMRIGAEVYHHLKGVIKSKYGKDATNVGDEGGFAPNILEN |
NVINGGSHAGNKLAM.EFMILPVGAA.F.EAM..GAEVYH.LK..IK.KYG.DATNVGDEGGFA.NILEN | |
Retrocopy | NVINGGSHAGNKLAM*EFMILPVGAANFKEAMCVGAEVYHNLKSMIKQKYGQDATNVGDEGGFATNILEN |
Parental | NEALELLKTAIQAAGYPDKVVIGMDVAASEFYKNGKYDLDFKSPDDPARHISGEKLGELYKSFIKNYPVV |
.EAL.LLK.AI...GY.DKV.IGMDVAAS.F...GKYDLDFK..DD..R.IS....G.LYKSFIK..PVV | |
Retrocopy | KEALNLLKNAIDKTGYTDKVLIGMDVAASAFF*SGKYDLDFKPHDDFSRYISLSEFGNLYKSFIKDHPVV |
Parental | SIEDPFDQDDWATWTKFLSGVDIQIVGDDLTVTNPKRIAQAVEKRACNCLLLKVNQIGSVTESIQACKLA |
SIEDPFDQDDW.TW..F.....IQ.VGDDLTVTNPKRI..AV...ACNCLLLKV.QIGS.TES.Q.CKLA | |
Retrocopy | SIEDPFDQDDWETWKNFTATASIQVVGDDLTVTNPKRIEKAVNEKACNCLLLKVTQIGSMTESLQVCKLA |
Parental | QTNGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEALGDKAV-FAGRKFR |
Q.NGWGVMVSHRS.ETEDTFIADLVVGLCTGQIKTGAPC.SE.LAKYNQ..R.EE..G.KA..FA.R.FR | |
Retrocopy | QSNGWGVMVSHRSEETEDTFIADLVVGLCTGQIKTGAPC*SEHLAKYNQILRVEEEIGSKAN<FAERNFR |
Parental | NPKAK |
....K | |
Retrocopy | KFQVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000015802 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000011679 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011654 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000005942 | 11 retrocopies | |
Macropus eugenii | ENSMEUG00000007840 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000007915 | 25 retrocopies |
retro_meug_1019, retro_meug_1341, retro_meug_1483, retro_meug_1540, retro_meug_1566, retro_meug_1605, retro_meug_170, retro_meug_1701, retro_meug_1743, retro_meug_1869, retro_meug_1905, retro_meug_1929, retro_meug_2026, retro_meug_2190, retro_meug_235, retro_meug_269, retro_meug_578, retro_meug_607, retro_meug_637 , retro_meug_803, retro_meug_820, retro_meug_906, retro_meug_965, retro_meug_973, retro_meug_976,
|
Rattus norvegicus | ENSRNOG00000004078 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002346 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000007066 | 7 retrocopies |