RetrogeneDB ID: | retro_tsyr_2043 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_8274:30961..31725(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENO3 | ||
Ensembl ID: | ENSTSYG00000007066 | ||
Aliases: | None | ||
Description: | enolase 3 (beta, muscle) [Source:HGNC Symbol;Acc:3354] |
Percent Identity: | 78.52 % |
Parental protein coverage: | 59.16 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | EAMRIGAEVYHHLKGVIKAKYGKDATNVGDEGGFAPNILENNEALELLKTAIQAAGYPDKVVIGMDVAAS |
.A.RIGAEVYHHLKGVIKAKY.KD.T.VG.E.GFAPN.LENNE.LELL...IQ..GY.DKVV..MDVAAS | |
Retrocopy | KAIRIGAEVYHHLKGVIKAKYRKDTTIVG*EVGFAPNVLENNETLELLNKPIQVVGYADKVVTVMDVAAS |
Parental | EFYRNGKYDLDFKSPDDPARHITGEKLGELYKSFIKNYPVVSIEDPFDQDDWATWTSFLSGVDIQIVGDD |
EFY.N.KY.LDFKSPDDPARHIT.E.LGELYKSFIKNYPV.SI.DPFDQ.DWATW.SFLSGVDIQIVG.D | |
Retrocopy | EFYHNRKYNLDFKSPDDPARHITEEELGELYKSFIKNYPVFSIKDPFDQGDWATWASFLSGVDIQIVGYD |
Parental | LTVTNPKRIAQAVEKKACKCLLLKVNQIGSVTESIQACKLAQSNG-WGVMVSHRSGETEDTFIADLVVGL |
LTVT.PKRIAQA.EKKA..CLLLKV.QIG.VTESIQACKL.QSNG...VMVSHRSGETEDTFI.DLVV.L | |
Retrocopy | LTVTSPKRIAQAIEKKAFNCLLLKVYQIGLVTESIQACKLTQSNG<SRVMVSHRSGETEDTFITDLVVRL |
Parental | CTGQIKTGAPCRSERLAKYNQLMRIEEALGDKAVFAGRKFRNPKAK |
CTGQ...GAPC.S..L.KYN.LMRI.E.LG.K.VFA..KF.NPK.K | |
Retrocopy | CTGQV*IGAPCHSVCLVKYN*LMRIKEVLGGKVVFAACKFHNPKTK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000011679 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011654 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000007915 | 25 retrocopies |
retro_meug_1019, retro_meug_1341, retro_meug_1483, retro_meug_1540, retro_meug_1566, retro_meug_1605, retro_meug_170, retro_meug_1701, retro_meug_1743, retro_meug_1869, retro_meug_1905, retro_meug_1929, retro_meug_2026, retro_meug_2190, retro_meug_235, retro_meug_269, retro_meug_578, retro_meug_607, retro_meug_637, retro_meug_803, retro_meug_820, retro_meug_906, retro_meug_965, retro_meug_973, retro_meug_976,
|
Rattus norvegicus | ENSRNOG00000004078 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002346 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000002509 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000007066 | 7 retrocopies |
retro_tsyr_1019, retro_tsyr_1157, retro_tsyr_1626, retro_tsyr_1917, retro_tsyr_2043 , retro_tsyr_52, retro_tsyr_534,
|