RetrogeneDB ID: | retro_meug_578 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold13958:25178..26122(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENO3 | ||
Ensembl ID: | ENSMEUG00000007915 | ||
Aliases: | None | ||
Description: | enolase 3 (beta, muscle) [Source:HGNC Symbol;Acc:3354] |
Percent Identity: | 66.98 % |
Parental protein coverage: | 72.58 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | KAGAAEKG-VPLYRHIADL-AGNPDLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGAASFREAMRIGAE |
KA.AAEKG...LY.HIADL........LPVPAFNVI..GSH.GNKLAMQEFMILPVGAA.F.E.MRIG.E | |
Retrocopy | KARAAEKG>ISLYCHIADL<TSHNKVILPVPAFNVISCGSHDGNKLAMQEFMILPVGAANFKEVMRIGSE |
Parental | VYHHLKGVIKSKYGKDATNVGDEGGFAPNILENNEALELLKTAIQAAGYPDKVVIGMDVAASEF-YKNGK |
VYH.L..VIK.KYG..ATN..D.GGF.PNILEN.EAL..LK.AI..AGY....VIG..V.ASEF....GK | |
Retrocopy | VYHNLNSVIKQKYGQHATNIED*GGFTPNILENKEALDMLKNAIGKAGYTHEMVIGVHVTASEF<LRSGK |
Parental | YDLDFKSPDDPARHISGEKLGELYKSFIKNYPVVSIEDPFDQDDWATWTKFLSGVDIQIVGDDLTVTNPK |
YDLDFKS.D...R.IS...LG...KSF.K.Y.V.SIE.P.DQD....W..F.....IQ.V..DLTVTN.K | |
Retrocopy | YDLDFKSSDCSGRSISPSELGDP*KSFRKDYLVGSIEHPSDQDA*EAWKNFTYTAGIQVVENDLTVTNLK |
Parental | RIAQAVEKRACNCLLLKVNQIGSVTESIQACKLAQTNGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTG |
.I..AV.K..CNCLLLKVN.IGSVTES.QACKLAQ.N..G.M.SH.SGETEDTFIADLVVG.CTGQIKT. | |
Retrocopy | *IEKAVNKKVCNCLLLKVNHIGSVTESLQACKLAQSNWSGLMISHPSGETEDTFIADLVVGICTGQIKTD |
Parental | APCRSERLAKYNQLMRIEEALGDKAVFAGRKFRNPKAK |
APCR...LAKYNQL.R.EE.LG.KA.FAGR.FRNP.AK | |
Retrocopy | APCRYKHLAKYNQLLRTEEELGSKAKFAGRNFRNPRAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000015802 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000011679 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011654 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000005942 | 11 retrocopies | |
Macropus eugenii | ENSMEUG00000007840 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000007915 | 25 retrocopies |
retro_meug_1019, retro_meug_1341, retro_meug_1483, retro_meug_1540, retro_meug_1566, retro_meug_1605, retro_meug_170, retro_meug_1701, retro_meug_1743, retro_meug_1869, retro_meug_1905, retro_meug_1929, retro_meug_2026, retro_meug_2190, retro_meug_235, retro_meug_269, retro_meug_578 , retro_meug_607, retro_meug_637, retro_meug_803, retro_meug_820, retro_meug_906, retro_meug_965, retro_meug_973, retro_meug_976,
|
Rattus norvegicus | ENSRNOG00000004078 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002346 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000007066 | 7 retrocopies |