RetrogeneDB ID: | retro_tbel_4383 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_79787:1095..2398(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTBEG00000004440 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENO3 | ||
Ensembl ID: | ENSTBEG00000002346 | ||
Aliases: | None | ||
Description: | enolase 3 (beta, muscle) [Source:HGNC Symbol;Acc:3354] |
Percent Identity: | 78.49 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MAMQKIFAREILDSRGNPTVEVDLHTAKGRFRAAVPSGASTGIYEALELRDGDKSRYLGKGVLKAVEHIN |
M...KI.AREI.DSRG.PTVEVDL.T.KG.FRAAVPSGAS.GIYEALELRD.DK.RY.GKGV.KAVEHIN | |
Retrocopy | MSILKIHAREIFDSRGIPTVEVDLDTSKGLFRAAVPSGASIGIYEALELRDNDKTRYMGKGVSKAVEHIN |
Parental | KTLGPALLEKKLSVVDQEKVDKFLIELYGTENKSKFGANAILGVSLAVCKAGAAEKGVPLYRHIADLAGN |
KT..PAL..KKL.VV.QEK.DK..IE..G.ENKSKFG.NAIL.VSLAVCKAGA.EKGVPLYRHIADLAGN | |
Retrocopy | KTIAPALVSKKLNVVEQEKIDKLMIETDGMENKSKFGVNAILRVSLAVCKAGAVEKGVPLYRHIADLAGN |
Parental | PDLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMRI-GAEVYHHLKGVIKAKYGKDATNVGD |
....LPVPAFNVI.GGSHAGNKLAMQEFMILPVGA..F.EA.RI.G.EVYH.LK.VIK.KYGKDATNVGD | |
Retrocopy | SEVILPVPAFNVISGGSHAGNKLAMQEFMILPVGAANFREAIRI>GVEVYHNLKKVIKEKYGKDATNVGD |
Parental | EGGFAPNILENNEALELLKTAIQAAGYPDKVVIGMDVAASEFYRNGKYDLDFKSPDDPARHITGEKLGEL |
EG.FAPNIL.N.EALELLK..I..AGY.DKVVIGMDVAASEF.R.GKYDLDFKSPDD..R.IT...L..L | |
Retrocopy | EGEFAPNILKNKEALELLKDVIAKAGYSDKVVIGMDVAASEFFRSGKYDLDFKSPDDASRYITPDQLADL |
Parental | YKSFIKNYPVVSIEDPFDQDDWGTWTSFLSGVDIQIVGDDLTVTNPKRIAQAVEKKACNCLLLKVNQIGS |
YKSFIK.YPVVSIEDPFDQD.W..W..F.....IQ.VGD.LTVTNPKRIA.A...K.CNCLLLKVNQIGS | |
Retrocopy | YKSFIKDYPVVSIEDPFDQDGWNAWQKFTDTAEIQVVGDNLTVTNPKRIAKAMGEKSCNCLLLKVNQIGS |
Parental | VTESIQACKLAQSNGW-GVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEALG |
.TES.QACKLAQSNGW.G.MVSH.SGETEDTFIADLVVGLCTGQIKTGAPC.SE.LAKYNQL.RIEE.LG | |
Retrocopy | ITESLQACKLAQSNGW>GMMVSHHSGETEDTFIADLVVGLCTGQIKTGAPCLSEHLAKYNQLLRIEEELG |
Parental | DKA-VFAGRKFRNPKAK |
.KA..FAGR.FRNP..K | |
Retrocopy | SKA<KFAGRNFRNPLTK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000011679 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011654 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000007915 | 25 retrocopies |
retro_meug_1019, retro_meug_1341, retro_meug_1483, retro_meug_1540, retro_meug_1566, retro_meug_1605, retro_meug_170, retro_meug_1701, retro_meug_1743, retro_meug_1869, retro_meug_1905, retro_meug_1929, retro_meug_2026, retro_meug_2190, retro_meug_235, retro_meug_269, retro_meug_578, retro_meug_607, retro_meug_637, retro_meug_803, retro_meug_820, retro_meug_906, retro_meug_965, retro_meug_973, retro_meug_976,
|
Rattus norvegicus | ENSRNOG00000004078 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002346 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000007066 | 7 retrocopies |