RetrogeneDB ID: | retro_tbel_3130 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_131038:6246..7239(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTBEG00000005843 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENO3 | ||
Ensembl ID: | ENSTBEG00000002346 | ||
Aliases: | None | ||
Description: | enolase 3 (beta, muscle) [Source:HGNC Symbol;Acc:3354] |
Percent Identity: | 69.14 % |
Parental protein coverage: | 76.5 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | GPALLEKKLSVV-DQEKVDKFLIELYGTENKSKFGANAILGVSLAVCKAGAAEKGVP-LYRHIADLAGNP |
G..L..KKL.V..D.EK.DK..IE..GTENK.KFG.NAIL.VSLAVC.AG..EK.VP.LYRHIA.L.GN. | |
Retrocopy | GATLVSKKLHVM>DLEKIDKLMIEMDGTENKAKFGVNAILQVSLAVCNAGDGEKRVP<LYRHIANLTGNF |
Parental | DLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMRIGAEVYHHLKGVIKAKYGKDATNVGDEG |
..V.P.PAF.V.NGGS.AGNKLAMQEF..LP.GA.SF.EAM.IG.EVYH.LK.VI..KYGKDAT..GD.G | |
Retrocopy | EVVPPTPAFSVVNGGSQAGNKLAMQEFTVLPMGAASFREAMYIGVEVYHSLKNVIEEKYGKDATYMGDKG |
Parental | GFAPNILENNEALE-LLKTAIQAAGYPDKVVIGMDVAASEFYRNGKYDLDFKSPDDPARHITGEKLGELY |
GFAPNILEN.EAL..LL..AI..AG..DKVV.GMDVAASE..R.GKYDLDFKSP....R.IT...L..LY | |
Retrocopy | GFAPNILENKEALD<LLNNAIGKAGSADKVVTGMDVAASELFRSGKYDLDFKSPNESSRYITPDRLADLY |
Parental | KSFIKNYPVVSIEDPFDQDDWGTWTSFLSGVDIQIVGDDLTVTNPKRIAQAVEKKACNCLLLKVNQI-GS |
KSFIK.YPVVS.EDPFDQ.DW.....F.....IQ.VGDDLTVT.PK.IA.A...K.CNCLLLKVNQ..GS | |
Retrocopy | KSFIKDYPVVSVEDPFDQNDWNAGQKFTATAGIQVVGDDLTVTTPKHIAKAMGEKSCNCLLLKVNQM<GS |
Parental | VTESIQACKLAQSNGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGA-PCRSERLA |
VTES.Q.CK.AQSNGWGV.V..RSGETEDTFIADLVVGLC..QIKTG..PC.S..LA | |
Retrocopy | VTESLQECKQAQSNGWGVTVCRRSGETEDTFIADLVVGLCARQIKTGG<PCWSKCLA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000011679 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011654 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000007915 | 25 retrocopies |
retro_meug_1019, retro_meug_1341, retro_meug_1483, retro_meug_1540, retro_meug_1566, retro_meug_1605, retro_meug_170, retro_meug_1701, retro_meug_1743, retro_meug_1869, retro_meug_1905, retro_meug_1929, retro_meug_2026, retro_meug_2190, retro_meug_235, retro_meug_269, retro_meug_578, retro_meug_607, retro_meug_637, retro_meug_803, retro_meug_820, retro_meug_906, retro_meug_965, retro_meug_973, retro_meug_976,
|
Rattus norvegicus | ENSRNOG00000004078 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002346 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000007066 | 7 retrocopies |