RetrogeneDB ID: | retro_ggor_2695 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 8:143151843..143152320(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDC42 | ||
Ensembl ID: | ENSGGOG00000024439 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.05 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT |
VPTVFDNYAVTVMIGGE.YTLGLFDTAGQ.D.DRL.PLSY.QTDVF.VCFSVVSPSSFENVK.KWV..IT | |
Retrocopy | VPTVFDNYAVTVMIGGETYTLGLFDTAGQYDDDRL*PLSYLQTDVFPVCFSVVSPSSFENVKGKWVSKIT |
Parental | HHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA |
H.CPKT.FLLVGTQI.LRDDPSTIEKLAKNKQKP.TPETAEKL.RDLKAV.YV.CSALTQKGL.NVFDEA | |
Retrocopy | HYCPKTHFLLVGTQIHLRDDPSTIEKLAKNKQKPTTPETAEKLIRDLKAVRYVVCSALTQKGLRNVFDEA |
Parental | ILAALEPPEPKKSRRCVLL |
ILAALEPPE.KKS.RCVLL | |
Retrocopy | ILAALEPPELKKSHRCVLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 1 .63 RPM | 51 .79 RPM |
SRP007412_cerebellum | 1 .02 RPM | 45 .35 RPM |
SRP007412_heart | 0 .22 RPM | 22 .48 RPM |
SRP007412_kidney | 2 .17 RPM | 96 .87 RPM |
SRP007412_liver | 1 .40 RPM | 64 .94 RPM |
SRP007412_testis | 2 .07 RPM | 71 .48 RPM |