RetrogeneDB ID: | retro_ggor_1932 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 3:39315695..39316022(-) | ||
Located in intron of: | ENSGGOG00000010536 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDC42 | ||
Ensembl ID: | ENSGGOG00000024439 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.68 % |
Parental protein coverage: | 67.92 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | VPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLS-YPQTDVFLVCFSVVSPSSFENVKEKWVPEI |
VPT...NY.VTVM.GGEPY.LGLFDT.GQE.Y..L..LS.YPQTD.FLV.FSVVSPSSF.NVKEKWVP.I | |
Retrocopy | VPTISNNYVVTVMVGGEPYALGLFDTSGQEGYKILQLLS<YPQTDIFLVSFSVVSPSSFKNVKEKWVPVI |
Parental | THHCPKTPFLLVGTQIDLRD-DPSTIEKLAKN-KQKPITPE |
THH.PK.PFLLV.TQI.LR..DPST..KLAKN.KQKPITP. | |
Retrocopy | THHYPKIPFLLVETQIHLRE>DPSTLVKLAKNKKQKPITPD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 51 .79 RPM |
SRP007412_cerebellum | 0 .04 RPM | 45 .35 RPM |
SRP007412_heart | 0 .00 RPM | 22 .48 RPM |
SRP007412_kidney | 0 .04 RPM | 96 .87 RPM |
SRP007412_liver | 0 .00 RPM | 64 .94 RPM |
SRP007412_testis | 0 .00 RPM | 71 .48 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2775 |
Pongo abelii | retro_pabe_2240 |