RetrogeneDB ID:

retro_meug_1552

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:Scaffold4509:36966..37341(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMEUG00000006613
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_meug_1552
AAAGCTATTAAGATAAAAACCCTAAGTGATATAAGAGCAAAACAGAAGTTTTCCCCCATCACGACCAAACTCATAAAATT
GCTTGCTGAAAATGGTCACTTAAACAACACCCCAGGAATCATTTCAGCATTTTCTACCAAGATGAGTGTGCATCATGGAG
AAATACAGTGTTCAGTTACTACTGCATCTACTTTAGATGACACAATTCTTTCAGAATTAAAAACAATCCTGAACAGTTTC
CTAAGGAGAGGCCAAGTGCTGGAAATGGAGGTTAAGACAGACCCTTTCTTGATTGTTCGTGTAGGAAAGAAATATATGGA
TGTGTTTGCAAGAACCAATATCCAGAAGCTAAGCAGGATTATGAAGGAAACTGTT

ORF - retro_meug_1552 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 71.32 %
Parental protein coverage: 60.56 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalRSVKMKALNDVIAKEKFSPITTNLMKLLAENGRLNNTPGVISAFSTMMSVHRGEVQCSVTTASALDDATL
...K.K.L.D..AK.KFSPITT.L.KLLAENG.LNNTPG.ISAFST.MSVH.GE.QCSVTTAS.LDD..L
RetrocopyKAIKIKTLSDIRAKQKFSPITTKLIKLLAENGHLNNTPGIISAFSTKMSVHHGEIQCSVTTASTLDDTIL
ParentalSELKTVLNSFLKKGQVLKMEVKTDPSIMGGMIVRIGEKYVDMSARTKIQKLSRIMREAV
SELKT.LNSFL..GQVL.MEVKTDP......IVR.G.KY.D..ART.IQKLSRIM.E.V
RetrocopySELKTILNSFLRRGQVLEMEVKTDPFL----IVRVGKKYMDVFARTNIQKLSRIMKETV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1552 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1552 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 22 parental genes, and 47 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000147081 retrocopy
Canis familiaris ENSCAFG000000095413 retrocopies
Choloepus hoffmanni ENSCHOG000000112421 retrocopy
Callithrix jacchus ENSCJAG000000028731 retrocopy
Equus caballus ENSECAG000000090591 retrocopy
Echinops telfairi ENSETEG000000008075 retrocopies
Felis catus ENSFCAG000000286561 retrocopy
Homo sapiens ENSG000002418371 retrocopy
Gorilla gorilla ENSGGOG000000126111 retrocopy
Macropus eugenii ENSMEUG00000006613 4 retrocopies
Myotis lucifugus ENSMLUG000000082243 retrocopies
Macaca mulatta ENSMMUG000000155041 retrocopy
Monodelphis domestica ENSMODG000000210572 retrocopies
Mustela putorius furoENSMPUG000000013195 retrocopies
Mus musculus ENSMUSG000000229562 retrocopies
Otolemur garnettii ENSOGAG000000158504 retrocopies
Pongo abelii ENSPPYG000000113841 retrocopy
Pan troglodytes ENSPTRG000000138761 retrocopy
Rattus norvegicus ENSRNOG000000019911 retrocopy
Sarcophilus harrisii ENSSHAG000000004093 retrocopies
Sus scrofa ENSSSCG000000120422 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000086583 retrocopies



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