RetrogeneDB ID: | retro_mmus_955 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 12:84258334..84258973(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000042962 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Atp5o | ||
Ensembl ID: | ENSMUSG00000022956 | ||
Aliases: | Atp5o, ATPO, D12Wsu28e, OSCP | ||
Description: | ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit [Source:MGI Symbol;Acc:MGI:106341] |
Percent Identity: | 95.31 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAAPAASGLSRQVRSFSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKEKKLDQVEKELLRVGQLLK |
MAAPAASGLSRQ.RSFSTSVV.PFAKLVRPPVQVYGIEGRYATALYSAASK.KKLDQVEKELLRVGQLLK | |
Retrocopy | MAAPAASGLSRQIRSFSTSVVGPFAKLVRPPVQVYGIEGRYATALYSAASKKKKLDQVEKELLRVGQLLK |
Parental | DPKVSLAVLNPYIKRTVKVKSLNDITKREKFSPLTANLMNLLAENGRLGNTQGIISAFSTIMSVHRGEVP |
DPKVSLAVLNPYIKRT.KVKSLNDITK.EKFSPLTANLMNLLAENGRLGNTQGIISAFSTIMSVHRG.VP | |
Retrocopy | DPKVSLAVLNPYIKRTIKVKSLNDITKKEKFSPLTANLMNLLAENGRLGNTQGIISAFSTIMSVHRGQVP |
Parental | CTVTTASPLDDAVLSELKTVLKSFLSPNQILKLEIKTDPSIMGGMIVRIGEKYVDMSAKSKIQKLSKAMR |
CTVTTASPLDDAVLSELKTVLKSFLSPNQILKLEIKT.PSIMG.MIVRIGEKY..MSAKSKIQKLSKAMR | |
Retrocopy | CTVTTASPLDDAVLSELKTVLKSFLSPNQILKLEIKTGPSIMGWMIVRIGEKYLVMSAKSKIQKLSKAMR |
Parental | EML |
EML | |
Retrocopy | EML |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .51 RPM | 104 .29 RPM |
SRP007412_cerebellum | 0 .83 RPM | 95 .09 RPM |
SRP007412_heart | 1 .99 RPM | 589 .05 RPM |
SRP007412_kidney | 4 .75 RPM | 266 .72 RPM |
SRP007412_liver | 1 .42 RPM | 102 .49 RPM |
SRP007412_testis | 1 .69 RPM | 51 .46 RPM |