Parental gene:

ATP5O, ENSSSCG00000012042

Aliases:LOC733678, ATP5O, OSCP
Description:Sus scrofa ATP synthase H+-transporting mitochondrial F1 complex O subunit (LOC733678), nuclear gene encoding mitochondrial protein, mRNA. [Source:RefSeq mRNA;Acc:NM_001044606]
Organism:Pig (Sus scrofa)
Coordinates:13:207336285..207346588(-)


>ENSSSCG00000012042
ATGGCCTCCCAAGCAGTGTCCGGGCTTTCCCGGCAGGTGCGATGCTTCAGTACATCTGTGGTCAGGCCATTTGCCAAGCT
TGTGAGGCCACCTGTTCAGATATATGGTATCGAAGGTCGCTATGCCACTGCTCTTTATTCTGCTGCATCTAAACAGAATA
AACTGGAACAAGTGGAAAAAGAATTGTTGAGAGTAGCACAAATCTTGAAGGAACCCAAAGTGGCTGCTTCTATTATGAAT
CCCTATGTAAAGCGTTCCGTCAAAGTCAAGAGCCTGAGCGACATGACAGCAAAGGAGAAGTTTTCTCCCCTGACGTCCAA
CCTGATCAATTTGCTTGCTGAAAACGGTCGCTTGAGCAGTACCCCTGGCGTCATTTCTGCCTTTTCTACCATGATGAGTG
TCCACCGCGGAGAAGTACCTTGTTCCGTCACCACTGCATCTCCTTTAGATGAAGCCACTCTTACAGAGTTAAAAACAGTC
CTGAAGAGCTTCCTAAGTAAAGGCCAAATATTGAAGTTGGAAGTGAAGGTTGATCCATCAATCATGGGCGGAATGATTGT
CCGAATTGGAGAGAAATATGTTGATATGTCAGCAAAAACCAAGATTCAGAAGCTGAGCAGAGCCATGCGGGAGATTTTTT
AA

Library Parental gene expression (RPM)
SRP014902_placenta 43 .67 RPM
SRP014902_testis 51 .63 RPM
SRP018288_heart 581 .65 RPM
SRP018288_kidney 229 .52 RPM
SRP018288_liver 101 .86 RPM
SRP018288_lung 101 .52 RPM
SRP018856_adipose 70 .25 RPM
SRP035408_brain 360 .32 RPM
SRP035408_liver 339 .56 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014708 ortholog_one2one 1 retrogene
retro_amel_1914,
Canis familiaris ENSCAFG00000009541 ortholog_one2many 3 retrogenes
retro_cfam_1277, retro_cfam_2198, retro_cfam_235,
Choloepus hoffmanni ENSCHOG00000011242 ortholog_one2one 1 retrogene
retro_chof_638,
Callithrix jacchus ENSCJAG00000002873 ortholog_one2one 1 retrogene
retro_cjac_1567,
Equus caballus ENSECAG00000009059 ortholog_one2one 1 retrogene
retro_ecab_633,
Echinops telfairi ENSETEG00000000807 ortholog_one2one 5 retrogenes
retro_etel_1412, retro_etel_1906, retro_etel_507, retro_etel_839, retro_etel_841,
Felis catus ENSFCAG00000028656 ortholog_one2one 1 retrogene
retro_fcat_1511,
Homo sapiens ENSG00000241837 ortholog_one2many 1 retrogene
retro_hsap_2377,
Gorilla gorilla ENSGGOG00000012611 ortholog_one2one 1 retrogene
retro_ggor_1803,
Macropus eugenii ENSMEUG00000006613 ortholog_one2one 4 retrogenes
retro_meug_122, retro_meug_1552, retro_meug_381, retro_meug_805,
Myotis lucifugus ENSMLUG00000008224 ortholog_one2many 3 retrogenes
retro_mluc_1833, retro_mluc_826, retro_mluc_856,
Macaca mulatta ENSMMUG00000015504 ortholog_one2many 1 retrogene
retro_mmul_253,
Monodelphis domestica ENSMODG00000021057 ortholog_one2many 2 retrogenes
retro_mdom_280, retro_mdom_95,
Mustela putorius furo ENSMPUG00000001319 ortholog_one2one 5 retrogenes
retro_mputfur_1593, retro_mputfur_1628, retro_mputfur_1639, retro_mputfur_581, retro_mputfur_918,
Mus musculus ENSMUSG00000022956 ortholog_one2one 2 retrogenes
retro_mmus_2196, retro_mmus_955,
Otolemur garnettii ENSOGAG00000015850 ortholog_one2many 4 retrogenes
retro_ogar_3518, retro_ogar_418, retro_ogar_559, retro_ogar_944,
Pongo abelii ENSPPYG00000011384 ortholog_one2one 1 retrogene
retro_pabe_2247,
Pan troglodytes ENSPTRG00000013876 ortholog_one2one 1 retrogene
retro_ptro_1739,
Rattus norvegicus ENSRNOG00000001991 ortholog_one2one 1 retrogene
retro_rnor_2210,
Sarcophilus harrisii ENSSHAG00000000409 ortholog_one2one 3 retrogenes
retro_shar_369, retro_shar_389, retro_shar_668,
Ictidomys tridecemlineatus ENSSTOG00000008658 ortholog_one2one 3 retrogenes
retro_itri_1030, retro_itri_565, retro_itri_794,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_226 74.78 53.52
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2. retro_sscr_566 76.33 78.87
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Download FASTA sequences of all ENSSSCG00000012042 retrocopies