RetrogeneDB ID: | retro_sscr_566 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 17:42098306..42098799(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5O | ||
Ensembl ID: | ENSSSCG00000012042 | ||
Aliases: | LOC733678, ATP5O, OSCP | ||
Description: | Sus scrofa ATP synthase H+-transporting mitochondrial F1 complex O subunit (LOC733678), nuclear gene encoding mitochondrial protein, mRNA. [Source:RefSeq mRNA;Acc:NM_001044606] |
Percent Identity: | 76.33 % |
Parental protein coverage: | 78.87 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPKVAASIMNPYVKRSVKVKSLSDMT |
.VRPPV.I.GIEG.Y.TAL.SA.S.QNKLEQV.KELL.VAQILKE....A.IMNPYVK...KVKSL.DM. | |
Retrocopy | VVRPPVHICGIEGHYVTAL*SAVSNQNKLEQVAKELLGVAQILKE-NLVAPIMNPYVKHCIKVKSLYDMI |
Parental | AKEKFSPLTSNLINLLAENGRLSSTPGVISAFSTMMSVHRGEVPCS-VTTASPLDEATLTELKTVLKSFL |
AKE.FSPLT.NLINLLAENGRLS..PGVISAFSTMMSVH.GEVPCS..TT.SP.DEATLT.LKTVLKSFL | |
Retrocopy | AKERFSPLTANLINLLAENGRLSNNPGVISAFSTMMSVHTGEVPCS>ITT-SPFDEATLTGLKTVLKSFL |
Parental | SKGQILKLEVKVDPSIMGGMIVRIGEKYV |
SKGQ...LEVK.D..I...MIV.IGEKYV | |
Retrocopy | SKGQV--LEVKIDATIVSRMIVHIGEKYV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .13 RPM | 43 .67 RPM |
SRP014902_testis | 0 .00 RPM | 51 .63 RPM |
SRP018288_heart | 0 .03 RPM | 581 .65 RPM |
SRP018288_kidney | 0 .00 RPM | 229 .52 RPM |
SRP018288_liver | 0 .00 RPM | 101 .86 RPM |
SRP018288_lung | 0 .00 RPM | 101 .52 RPM |
SRP018856_adipose | 0 .00 RPM | 70 .25 RPM |
SRP035408_brain | 0 .44 RPM | 360 .32 RPM |
SRP035408_liver | 0 .00 RPM | 339 .56 RPM |