RetrogeneDB ID:

retro_ogar_418

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873521.1:15720234..15720869(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000031523
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:B4USW5_OTOGA
Ensembl ID:ENSOGAG00000015850
Aliases:None
Description:Mitochondrial ATP synthase, O subunit (Predicted) [Source:UniProtKB/TrEMBL;Acc:B4USW5]


Retrocopy-Parental alignment summary:






>retro_ogar_418
ATGGCCACCCCAGCAGTGTCCGGGATCTCCTGGCAGGTGTGATGCTCAGTACCTCTGTGGCCAGGCCATGTGCAAAGCAT
GTGAGGACACCTGTTCAGATATATGGTGCTGAACATCACTATGCCACTGTGCTTTATTCTGCTACATCAAAACAGAATAA
GCTAGAACAAGTAGAAAAGGAGTTGTTGAGAGTATCACAACTCCTGAAGGAACCTACAATGGCTGCTTCTATTTGATCCC
TAAGTGAAACGTTTCATTAAAGTGAAAATCCTAAATGACATTATGGCAAAAGAGCAGTTTTCTTTCCTCACGTCCAACCT
GATGAAATTGCTTGCTGAAATGGTCACTTAAGAGATACCCAAGGAGTGATTTCTGCCTTTTCCACCATGAGGAGTGTCCA
CCGTGGTGGGGTGTCTTATACAGTGACCACTCCATCTCCTCTAGAAGAAACTACTCTCACTAAATTAAAAGCAGTCCTGA
AAAGCTCCCTAAGCCAAGGCCAGATACTGAAATTGGAGGTTAAGACTGATCCAGCAATCATGAGTGGAGTGATTATTCAT
ATTGGAGTGAAATATGAGGACATGTCTGCAAAAACCAAAATTCAGAACCTGAGCAGGGCTATGCCAGAGGTGATC

ORF - retro_ogar_418 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 75.12 %
Parental protein coverage: 100. %
Number of stop codons detected: 3
Number of frameshifts detected 4


Retrocopy - Parental Gene Alignment:

ParentalMAAPAVSGISRQVRC-FSTSVARPFTKLVRPPVQIHGVEGRYATALYSAASKQNKLEQVEKELLRVSQLL
MA.PAVSGIS.QV.C..STSVARP..K.VR.PVQI.G.E..YAT.LYSA.SKQNKLEQVEKELLRVSQLL
RetrocopyMATPAVSGISWQV*C<LSTSVARPCAKHVRTPVQIYGAEHHYATVLYSATSKQNKLEQVEKELLRVSQLL
ParentalKEPKMAASI-LNPYVKRSVKVKS-LNDITAKERFSPLTANLMNLLAE-NGRLSNTQGVISAFSTMMSVHR
KEP.MAASI.L.P....S.K.KS.LNDI.AKE.FS.LT.NLM.LLAE.NG.L..TQGVISAFSTM.SVHR
RetrocopyKEPTMAASI<LIPK*NVSLK*KS<LNDIMAKEQFSFLTSNLMKLLAE<NGHLRDTQGVISAFSTMRSVHR
ParentalGEVPCTVTTASPLEEATLTELKTVLKSFLGQGQILKLEVKTDPAIMGGMIVRIGEKYVDMSAKTKIQKLT
G.V..TVTT.SPLEE.TLT.LK.VLKS.L.QGQILKLEVKTDPAIM.G.I..IG.KY.DMSAKTKIQ.L.
RetrocopyGGVSYTVTTPSPLEETTLTKLKAVLKSSLSQGQILKLEVKTDPAIMSGVIIHIGVKYEDMSAKTKIQNLS
ParentalRAMQEII
RAM.E.I
RetrocopyRAMPEVI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_418 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 22 parental genes, and 47 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000147081 retrocopy
Canis familiaris ENSCAFG000000095413 retrocopies
Choloepus hoffmanni ENSCHOG000000112421 retrocopy
Callithrix jacchus ENSCJAG000000028731 retrocopy
Equus caballus ENSECAG000000090591 retrocopy
Echinops telfairi ENSETEG000000008075 retrocopies
Felis catus ENSFCAG000000286561 retrocopy
Homo sapiens ENSG000002418371 retrocopy
Gorilla gorilla ENSGGOG000000126111 retrocopy
Macropus eugenii ENSMEUG000000066134 retrocopies
Myotis lucifugus ENSMLUG000000082243 retrocopies
Macaca mulatta ENSMMUG000000155041 retrocopy
Monodelphis domestica ENSMODG000000210572 retrocopies
Mustela putorius furoENSMPUG000000013195 retrocopies
Mus musculus ENSMUSG000000229562 retrocopies
Otolemur garnettii ENSOGAG00000015850 4 retrocopies
Pongo abelii ENSPPYG000000113841 retrocopy
Pan troglodytes ENSPTRG000000138761 retrocopy
Rattus norvegicus ENSRNOG000000019911 retrocopy
Sarcophilus harrisii ENSSHAG000000004093 retrocopies
Sus scrofa ENSSSCG000000120422 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000086583 retrocopies



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