RetrogeneDB ID: | retro_mmus_2196 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 3:110399129..110399774(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Atp5o | ||
Ensembl ID: | ENSMUSG00000022956 | ||
Aliases: | Atp5o, ATPO, D12Wsu28e, OSCP | ||
Description: | ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit [Source:MGI Symbol;Acc:MGI:106341] |
Percent Identity: | 60.09 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MAAPAASGLSRQVRSFSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKEKKLDQVE-KELLRVGQLL |
MA.PA.S.LS.Q..SFS.SVVRPFAK.V.PPV..YGIEG...T...SAASK..K.D..E.KELL..GQLL | |
Retrocopy | MATPAVSSLSQQTLSFSASVVRPFAKHVMPPV*IYGIEGHCTTSVFSAASKMNKQD*ME<KELLLLGQLL |
Parental | KDPKVSLAVLNPYIKRTVKVKSLNDITKREKFSPLTANLMNLLAENGRLGNTQGIISAFSTIMSVHRGEV |
KD.KVSL..LN.YIK...KVK...DIT.RE.FSPL..NL.NLLAENG.L.N.QG.ISAFST..S...G.. | |
Retrocopy | KDAKVSLTLLNSYIKHCIKVKTTKDITTREIFSPLISNLINLLAENGHLSN-QGVISAFSTTVSIYPGKM |
Parental | PCTVTTASPLDDAVLSELKTVLKSFLS-PNQILKLEIKTDPSIMGGMIVRIGEKY---VDMSAKSKIQKL |
.CTVTTA.PL...VLSEL.TVL...L....Q.LK.E.KT.P.IMG.M...I.E.......M.AK...QKL | |
Retrocopy | SCTVTTAFPLYEIVLSELMTVLIEHLK>QGQVLKFEVKTAPLIMGEMVAGIAENW*EVINMFAKTPVQKL |
Parental | SKAMREML |
S..MREML | |
Retrocopy | SQIMREML |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 104 .29 RPM |
SRP007412_cerebellum | 0 .00 RPM | 95 .09 RPM |
SRP007412_heart | 0 .00 RPM | 589 .05 RPM |
SRP007412_kidney | 0 .00 RPM | 266 .72 RPM |
SRP007412_liver | 0 .00 RPM | 102 .49 RPM |
SRP007412_testis | 0 .00 RPM | 51 .46 RPM |