RetrogeneDB ID: | retro_rnor_2210 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 5:40368614..40369182(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Atp5o | ||
Ensembl ID: | ENSRNOG00000001991 | ||
Aliases: | Atp5o, Atpo, Oscp | ||
Description: | ATP synthase subunit O, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q06647] |
Percent Identity: | 69.95 % |
Parental protein coverage: | 89.67 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MAAPATSVLSRQVRSFSTSVVRPFSKLVR-PPVQVYGIEGRYATALYSAASKQKRLDQVEKELLRVGQLL |
MAA.ATS.LS.Q..SFSTSVVRPF.KLVR...VQV..IEG.YATALYSAASKQ..LDQVE......G... | |
Retrocopy | MAALATSGLSQQMQSFSTSVVRPFDKLVR<ALVQVHSIEGSYATALYSAASKQNKLDQVE-SCCEWGNS* |
Parental | KDPKVSLAVLNPYIKRSIKVKSLKDITTKEKFSPLTANLMNLLAENGRLGNTQGVISAFSTIMSVHRGEV |
..P...L....P.IK.SIKVKSL.DITTKEKFSPL..NLMNLLAENG.LGNTQ....AFSTIMSVH.GEV | |
Retrocopy | RIPRCLLLF*IPTIKPSIKVKSLHDITTKEKFSPLKTNLMNLLAENGCLGNTQVIVFAFSTIMSVHCGEV |
Parental | PCTVTTAFPLDEAVLSELKTVLNSFLSKGQILNLEVKTD-PSIMGGMIVRIGE |
PCTV.TAFPLDEAVLSELKT.L.SFL..GQIL.LEVKT..P.IM.G.....GE | |
Retrocopy | PCTVITAFPLDEAVLSELKTGLKSFLRQGQILELEVKTG<P*IMLGDCLNWGE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 85 .13 RPM |
SRP017611_kidney | 0 .00 RPM | 262 .17 RPM |
SRP017611_liver | 0 .00 RPM | 88 .28 RPM |