RetrogeneDB ID: retro_mputfur_190

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: AEYP01110452.1:4104..4534(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RPL26L1
• Ensembl ID: ENSMPUG00000012729
• Aliases: None
• Description: ribosomal protein L26-like 1 [Source:HGNC Symbol;Acc:17050]

Sequence

>retro_mputfur_190
AAGTTGAATCCCTTTGTGACTTCTGACCTGAGCAAGAAGCAGAAACGGCATTTTAGTGCACCTTCTCACACTCGCAGGAA
GATTATGTCTTCCTGTCTTTCTAAAGAGCTGACACAGAAGTACAATCCTTCATCCGTGCCCACCTGAAGGGATGATGAGG
TACAGGTTGTGCCAGGACACGACAAAAGCCAGCCAGCAAATTGGCAAAGTTGTCTACATTTAGAAGAAATAGATCATCTA
CATTGAATGAGTACAGCGTGAGAAGGTGAATGGCATGAATGTCCATGTGGGCATTCACCCTAGCAAGGTGGCTACCACTA
GACTAAAGCTAGACAAAACCCTCAAAATGATCTTTGAAGGTCAAGCCAGATCTCATCAGGTAGGAAAGGAAAACTGGAAA
TGTAAGGAAGAAACATTGGCAAGACAGAGG

Alignment

ORF - retro_mputfur_190 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 59.03 %
• Parental protein coverage: 98.58 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KFNPFVTLDRSKNRKRHFNAPS-VRRKIMSSPL-KELRQKYNIRSMPIRKDDDVQMVRGHYKGQQIGKVV
          K.NPFVT.D.SK..KRHF.APS..RRKIMSS.L.KEL.QKYN..S.P...DD.VQ.V.GH.K.Q......
Retrocopy KLNPFVTSDLSKKQKRHFSAPSHTRRKIMSSCLSKELTQKYNPSSVPT*RDDEVQVVPGHDKSQPANWQS

Parental  QVHR-KKYVIYIEQVQHEKANGTTVHVGIHPSKVVITRLKLDKDWKKIL--KRKSRQVGKEKGKYKEELL
          ..H..KK..IYIE.VQ.EK.NG..VHVGIHPSKV..TRLKLDK..K.I......S.QVGKE..K.KEE.L
Retrocopy CLHL>KK*IIYIE*VQREKVNGMNVHVGIHPSKVATTRLKLDKTLKMIFEGQARSHQVGKENWKCKEETL

Parental  EKMQ
          ....
Retrocopy ARQR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_190 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_190 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 53 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000002289	35 retrocopies	retro_dnov_1106, retro_dnov_1147, retro_dnov_1171, retro_dnov_1258, retro_dnov_1304, retro_dnov_1319, retro_dnov_1344, retro_dnov_1381, retro_dnov_1501, retro_dnov_1676, retro_dnov_1819, retro_dnov_1959, retro_dnov_2039, retro_dnov_2041, retro_dnov_2061, retro_dnov_2078, retro_dnov_2103, retro_dnov_2116, retro_dnov_2121, retro_dnov_2287, retro_dnov_2297, retro_dnov_2438, retro_dnov_2545, retro_dnov_2580, retro_dnov_2632, retro_dnov_300, retro_dnov_306, retro_dnov_467, retro_dnov_646, retro_dnov_666, retro_dnov_681, retro_dnov_760, retro_dnov_850, retro_dnov_970, retro_dnov_985,
Felis catus	ENSFCAG00000026949	1 retrocopy	retro_fcat_524,
Latimeria chalumnae	ENSLACG00000007599	2 retrocopies	retro_lcha_5, retro_lcha_8,
Myotis lucifugus	ENSMLUG00000009799	1 retrocopy	retro_mluc_1556,
Mustela putorius furo	ENSMPUG00000007988	12 retrocopies	retro_mputfur_1003, retro_mputfur_1146, retro_mputfur_1385, retro_mputfur_1428, retro_mputfur_1595, retro_mputfur_251, retro_mputfur_365, retro_mputfur_395, retro_mputfur_488, retro_mputfur_522, retro_mputfur_643, retro_mputfur_685,
Mustela putorius furo	ENSMPUG00000012729	2 retrocopies	retro_mputfur_1624, retro_mputfur_190 ,