RetrogeneDB ID: | retro_dnov_2103 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_47829:49780..50211(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26L1 | ||
Ensembl ID: | ENSDNOG00000002289 | ||
Aliases: | None | ||
Description: | ribosomal protein L26-like 1 [Source:HGNC Symbol;Acc:17050] |
Percent Identity: | 79.45 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
MKFNPFVTSD.SKN.KRHF..PSH..RKIMSSP.SKELRQK.NV..MPI.KDDEVQVV.G.Y.GQ.IGKV | |
Retrocopy | MKFNPFVTSDWSKNHKRHFSTPSHIWRKIMSSPFSKELRQKHNV*PMPIQKDDEVQVVQGLYEGQKIGKV |
Parental | -VQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEEL |
.VQVYRKK.VIY.E.VQ..KANGTTVHVG.HPSKV.ITRLKLDKD.KKIL..K.KS.Q.GKEKGKYKEE. | |
Retrocopy | <VQVYRKKSVIYSEQVQ-QKANGTTVHVGVHPSKVDITRLKLDKDHKKILKHKTKSHQAGKEKGKYKEET |
Parental | IEKMQE |
IEKMQE | |
Retrocopy | IEKMQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 12 .64 RPM |
SRP012922_cerebellum | 0 .00 RPM | 13 .33 RPM |
SRP012922_heart | 0 .00 RPM | 5 .34 RPM |
SRP012922_kidney | 0 .00 RPM | 10 .68 RPM |
SRP012922_liver | 0 .00 RPM | 6 .04 RPM |
SRP012922_lung | 0 .15 RPM | 16 .04 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 9 .17 RPM |
SRP012922_spleen | 0 .00 RPM | 13 .62 RPM |