RetrogeneDB ID: | retro_dnov_1819 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_3196:115085..115517(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26L1 | ||
Ensembl ID: | ENSDNOG00000002289 | ||
Aliases: | None | ||
Description: | ribosomal protein L26-like 1 [Source:HGNC Symbol;Acc:17050] |
Percent Identity: | 77.55 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
M.F.PFVT.D.S.NRK.HFNAP.HV.RKIMS..LSKEL.QKYNV.S..I.K.DEVQVV.GHYKGQQIGKV | |
Retrocopy | MTFKPFVTLDHSENRKHHFNAPWHV*RKIMSPLLSKELQQKYNVHSVTICKNDEVQVVQGHYKGQQIGKV |
Parental | VQVYRKKYVIYIERVQREKANGTTVHVGIHPSKV-VITRLKLDK-DRKKILERKAKSRQVGKEKGKYKEE |
VQVYRK.YVIYIE.V...KANGTTVHVGI.PSKV.VI.RLKLDK.DRKK.LE..AKS.Q.GK.KGKYKEE | |
Retrocopy | VQVYRKNYVIYIEKV*HDKANGTTVHVGIYPSKV>VIIRLKLDK<DRKKVLEHRAKS*QFGKGKGKYKEE |
Parental | LIEKMQE |
.IEKMQE | |
Retrocopy | -IEKMQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 12 .64 RPM |
SRP012922_cerebellum | 0 .41 RPM | 13 .33 RPM |
SRP012922_heart | 0 .00 RPM | 5 .34 RPM |
SRP012922_kidney | 0 .00 RPM | 10 .68 RPM |
SRP012922_liver | 0 .00 RPM | 6 .04 RPM |
SRP012922_lung | 0 .15 RPM | 16 .04 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 9 .17 RPM |
SRP012922_spleen | 0 .23 RPM | 13 .62 RPM |