Parental gene:

rpl26 (3 of 3), ENSLACG00000007599

Aliases:None
Description:ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
Organism:Coelacanth (Latimeria chalumnae)
Coordinates:JH127195.1:286482..299113(-)


>ENSLACG00000007599
ATGAAGTTCAACCCTCTTGTGACGTCTGATCGCAGCAAGAACCGTAAGAGGCACTTCAATGCTCCCTCTCACGTTCGCAG
AAAGATCATGTCTTCTCCTCTCTCCAAGGAGCTGAGACAGAAGTACAACGTACGCTCTATGCCCATCCGCAAGGACGATG
AAGTCCAGGTTGTCCGAGGACACTACAAAGGCCAGCAGATTGGCAAAGTTGTTCAAGTGTACAGAAAGAAATACGTCATC
TACATTGAACGTGTGCAGCGTGAAAAAGCCAATGGTACCACTGTCCATGTTGGCATTCACCCAAGCAAGGTGGTGATAAC
CAGACTAAAACTGGACAAAGATCGTAAGAAAATCCTAGAACGTAAAGCCAAATCTCGTCAAGTTGGCAAGGAGAAGGGCA
AATACAAGGAGGAAACCATTGAAAAAATGCAGGAGTAA

Library Parental gene expression (RPM)
DRP000627_gill 680 .63 RPM
DRP000627_kidney 818 .32 RPM
DRP000627_pectoral_fin 1020 .21 RPM
DRP000627_pelvic_fin 1102 .93 RPM
DRP000627_pharynx 508 .76 RPM
DRP000627_tail_muscle 330 .41 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011270 ortholog_one2many 7 retrogenes
retro_amel_1106, retro_amel_1477, retro_amel_172, retro_amel_272, retro_amel_560, retro_amel_788, retro_amel_887,
Dasypus novemcinctus ENSDNOG00000002289 ortholog_many2many 35 retrogenes
retro_dnov_1106, retro_dnov_1147, retro_dnov_1171, retro_dnov_1258, retro_dnov_1304, retro_dnov_1319, retro_dnov_1344, retro_dnov_1381, retro_dnov_1501, retro_dnov_1676, retro_dnov_1819, retro_dnov_1959, retro_dnov_2039, retro_dnov_2041, retro_dnov_2061, retro_dnov_2078, retro_dnov_2103, retro_dnov_2116, retro_dnov_2121, retro_dnov_2287, retro_dnov_2297, retro_dnov_2438, retro_dnov_2545, retro_dnov_2580, retro_dnov_2632, retro_dnov_300, retro_dnov_306, retro_dnov_467, retro_dnov_646, retro_dnov_666, retro_dnov_681, retro_dnov_760, retro_dnov_850, retro_dnov_970, retro_dnov_985,
Felis catus ENSFCAG00000026949 ortholog_many2many 1 retrogene
retro_fcat_524,
Homo sapiens ENSG00000037241 ortholog_one2many 2 retrogenes
retro_hsap_586, retro_hsap_837,
Microcebus murinus ENSMICG00000011312 ortholog_one2many 10 retrogenes
retro_mmur_1020, retro_mmur_1144, retro_mmur_313, retro_mmur_327, retro_mmur_346, retro_mmur_412, retro_mmur_471, retro_mmur_623, retro_mmur_72, retro_mmur_75,
Myotis lucifugus ENSMLUG00000009799 ortholog_many2many 1 retrogene
retro_mluc_1556,
Macaca mulatta ENSMMUG00000003070 ortholog_one2many 1 retrogene
retro_mmul_676,
Mustela putorius furo ENSMPUG00000012729 ortholog_one2many 2 retrogenes
retro_mputfur_1624, retro_mputfur_190,
Oryctolagus cuniculus ENSOCUG00000006172 ortholog_one2many 4 retrogenes
retro_ocun_1015, retro_ocun_1224, retro_ocun_354, retro_ocun_845,
Procavia capensis ENSPCAG00000002246 ortholog_one2many 10 retrogenes
retro_pcap_137, retro_pcap_157, retro_pcap_188, retro_pcap_204, retro_pcap_337, retro_pcap_404, retro_pcap_419, retro_pcap_42, retro_pcap_422, retro_pcap_448,
Pteropus vampyrus ENSPVAG00000003253 ortholog_one2many 8 retrogenes
retro_pvam_1062, retro_pvam_1208, retro_pvam_122, retro_pvam_353, retro_pvam_688, retro_pvam_71, retro_pvam_769, retro_pvam_877,
Sus scrofa ENSSSCG00000016989 ortholog_one2many 3 retrogenes
retro_sscr_1104, retro_sscr_462, retro_sscr_685,
Ictidomys tridecemlineatus ENSSTOG00000026876 ortholog_one2many 1 retrogene
retro_itri_1141,
Tarsius syrichta ENSTSYG00000001655 ortholog_one2many 2 retrogenes
retro_tsyr_1805, retro_tsyr_759,
Tursiops truncatus ENSTTRG00000010624 ortholog_one2many 8 retrogenes
retro_ttru_1070, retro_ttru_1124, retro_ttru_1694, retro_ttru_1818, retro_ttru_364, retro_ttru_386, retro_ttru_474, retro_ttru_646,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_lcha_5 98.62 100.00
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2. retro_lcha_8 94.48 100.00
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Download FASTA sequences of all ENSLACG00000007599 retrocopies