RetrogeneDB ID: | retro_dnov_467 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_5092:15428..15827(+) | ||
Located in intron of: | ENSDNOG00000012191 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26L1 | ||
Ensembl ID: | ENSDNOG00000002289 | ||
Aliases: | None | ||
Description: | ribosomal protein L26-like 1 [Source:HGNC Symbol;Acc:17050] |
Percent Identity: | 74.44 % |
Parental protein coverage: | 91.72 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
MKF..FVTSD.SK..KRHF.APSH..RKI.SSPLSKELR.K.NV.SMP..KDDEVQVV.GHYKGQQIGK. | |
Retrocopy | MKFSSFVTSDQSKSCKRHFKAPSHILRKIISSPLSKELRHK*NVPSMPKYKDDEVQVV*GHYKGQQIGKL |
Parental | VQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKG |
VQV.....VIYI..VQ..KA.G..VHVGIHPSKVVITRLKLDKD..KILERKAK..QV.KE.G | |
Retrocopy | VQVTGRNNVIYIAWVQWRKADGPAVHVGIHPSKVVITRLKLDKDHTKILERKAKPCQVVKEEG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 12 .64 RPM |
SRP012922_cerebellum | 0 .00 RPM | 13 .33 RPM |
SRP012922_heart | 0 .00 RPM | 5 .34 RPM |
SRP012922_kidney | 0 .00 RPM | 10 .68 RPM |
SRP012922_liver | 0 .00 RPM | 6 .04 RPM |
SRP012922_lung | 0 .00 RPM | 16 .04 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 9 .17 RPM |
SRP012922_spleen | 0 .00 RPM | 13 .62 RPM |