RetrogeneDB ID: | retro_dnov_2121 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_49412:10377..10810(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26L1 | ||
Ensembl ID: | ENSDNOG00000002289 | ||
Aliases: | None | ||
Description: | ribosomal protein L26-like 1 [Source:HGNC Symbol;Acc:17050] |
Percent Identity: | 91.03 % |
Parental protein coverage: | 99.31 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MKFNPFVTSDRSKNRKRHF-NAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGK |
MKFNPFVTS.RSKN.KRHF.NAPSH.RRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGK | |
Retrocopy | MKFNPFVTSGRSKNHKRHF>NAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGK |
Parental | VVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEEL |
VVQVYRKKYVIYIE..QREKANGTTV.V.IHPSKVVITRLKLDKDRKKILE.KAKS.QVGKEKGKYKE.. | |
Retrocopy | VVQVYRKKYVIYIEWEQREKANGTTVCVSIHPSKVVITRLKLDKDRKKILECKAKSHQVGKEKGKYKEKT |
Parental | IEKMQ |
.EKMQ | |
Retrocopy | TEKMQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 9 .14 RPM | 12 .64 RPM |
SRP012922_cerebellum | 2 .75 RPM | 13 .33 RPM |
SRP012922_heart | 3 .02 RPM | 5 .34 RPM |
SRP012922_kidney | 10 .13 RPM | 10 .68 RPM |
SRP012922_liver | 3 .72 RPM | 6 .04 RPM |
SRP012922_lung | 8 .71 RPM | 16 .04 RPM |
SRP012922_quadricep_muscle | 7 .27 RPM | 9 .17 RPM |
SRP012922_spleen | 9 .04 RPM | 13 .62 RPM |