RetrogeneDB ID: retro_mluc_1556

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429861:3074142..3074471(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RPL26L1
• Ensembl ID: ENSMLUG00000009799
• Aliases: None
• Description: None

Sequence

>retro_mluc_1556
AAGGAGCTGCAGCAGAAGTACAAGGTCCACTCCGTGCCCTTCTGCAAGGACAATAAGGTCCAGATGGATCGAGGACACCA
CACATGGCAGCAAAGCGGCAAGGTAAAGCAGGTGCACAGAAAGACATGTGTCATCTGCATGGACCGGTGCAGCGTGAGAA
GGCTAAGGGCACAACTGTGCATGTGGGCATGCACCCCAGCAAGGTGGCTCTCACCAGGCTAAAGCTGGACAAACATCGGA
AAAAAATTCTTGAATGCAAAGCCCAGTCTCCACAAGTTGGAAAAGAGGCAGGCAAATAGAAGGAAGAACTTACTGAGAAA
ATGCAGAAA

Alignment

ORF - retro_mluc_1556 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.37 %
• Parental protein coverage: 75.86 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KELRQKYSVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIER-VQREKANGTTVHVGIHPSKV
          KEL.QKY.V.S.P..KD..VQ..RGH...QQ.GKV.QV.RK..VI...R.VQREKA.GTTVHVG.HPSKV
Retrocopy KELQQKYKVHSVPFCKDNKVQMDRGHHTWQQSGKVKQVHRKTCVICMDR<VQREKAKGTTVHVGMHPSKV

Parental  VITRLKLDKDRKKILERKAKSRQVGKEKGKYKEELIEKMQE
          ..TRLKLDK.RKKILE.KA.S.QVGKE.GK.KEEL.EKMQ.
Retrocopy ALTRLKLDKHRKKILECKAQSPQVGKEAGK*KEELTEKMQK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1556 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 50 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000011270	7 retrocopies	retro_amel_1106, retro_amel_1477, retro_amel_172, retro_amel_272, retro_amel_560, retro_amel_788, retro_amel_887,
Dasypus novemcinctus	ENSDNOG00000002289	35 retrocopies	retro_dnov_1106, retro_dnov_1147, retro_dnov_1171, retro_dnov_1258, retro_dnov_1304, retro_dnov_1319, retro_dnov_1344, retro_dnov_1381, retro_dnov_1501, retro_dnov_1676, retro_dnov_1819, retro_dnov_1959, retro_dnov_2039, retro_dnov_2041, retro_dnov_2061, retro_dnov_2078, retro_dnov_2103, retro_dnov_2116, retro_dnov_2121, retro_dnov_2287, retro_dnov_2297, retro_dnov_2438, retro_dnov_2545, retro_dnov_2580, retro_dnov_2632, retro_dnov_300, retro_dnov_306, retro_dnov_467, retro_dnov_646, retro_dnov_666, retro_dnov_681, retro_dnov_760, retro_dnov_850, retro_dnov_970, retro_dnov_985,
Latimeria chalumnae	ENSLACG00000007599	2 retrocopies	retro_lcha_5, retro_lcha_8,
Myotis lucifugus	ENSMLUG00000002176	1 retrocopy	retro_mluc_232,
Myotis lucifugus	ENSMLUG00000009799	1 retrocopy	retro_mluc_1556 ,
Mustela putorius furo	ENSMPUG00000012729	2 retrocopies	retro_mputfur_1624, retro_mputfur_190,
Tarsius syrichta	ENSTSYG00000001655	2 retrocopies	retro_tsyr_1805, retro_tsyr_759,