RetrogeneDB ID: | retro_dnov_306 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_3460:167331..167766(+) | ||
Located in intron of: | ENSDNOG00000003488 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26L1 | ||
Ensembl ID: | ENSDNOG00000002289 | ||
Aliases: | None | ||
Description: | ribosomal protein L26-like 1 [Source:HGNC Symbol;Acc:17050] |
Percent Identity: | 84.14 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 0 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
M.FNPF.T.DRSKNRKRHFNAPSH..RKIMSSPLSK.LRQ.YNV..MPI.KD.EVQ.VRGHYKGQQIGKV | |
Retrocopy | M*FNPFLTCDRSKNRKRHFNAPSHIQRKIMSSPLSKKLRQNYNV*FMPI*KDHEVQDVRGHYKGQQIGKV |
Parental | VQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEELI |
V.VY.KKYVIY.E.VQR.KANGTTVH.GIH.SKVVITRLKLDKDRKKILE.KAKS.QVGKEKGKYKEE.I | |
Retrocopy | V*VYSKKYVIYLEWVQR*KANGTTVHMGIHLSKVVITRLKLDKDRKKILECKAKSSQVGKEKGKYKEETI |
Parental | EKMQE |
EKMQ. | |
Retrocopy | EKMQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 12 .64 RPM |
SRP012922_cerebellum | 0 .00 RPM | 13 .33 RPM |
SRP012922_heart | 0 .00 RPM | 5 .34 RPM |
SRP012922_kidney | 0 .00 RPM | 10 .68 RPM |
SRP012922_liver | 0 .00 RPM | 6 .04 RPM |
SRP012922_lung | 0 .00 RPM | 16 .04 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 9 .17 RPM |
SRP012922_spleen | 0 .11 RPM | 13 .62 RPM |