RetrogeneDB ID: | retro_dnov_2041 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_44088:6001..6349(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26L1 | ||
Ensembl ID: | ENSDNOG00000002289 | ||
Aliases: | None | ||
Description: | ribosomal protein L26-like 1 [Source:HGNC Symbol;Acc:17050] |
Percent Identity: | 75. % |
Parental protein coverage: | 84.14 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | HVRRKIMSSPLS-KELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANG |
H........PLS.KE.RQKYNV.SMPI.KDD...VV...YKGQQIGKVVQVY.KK...Y.E....EKANG | |
Retrocopy | HAKIFLGELPLS<KEMRQKYNV*SMPI*KDD---VV*RYYKGQQIGKVVQVYKKK*AVYTEW---EKANG |
Parental | TTVHVGIHPSKVVITRLK-LDKDRKKILERKAKSRQVGKEKGKYKEELIEKMQE |
TTVHVGIHPSK.VITRLK.LDKD.KKILERKAKSRQVGKEKGKYKEE.IEKMQE | |
Retrocopy | TTVHVGIHPSKAVITRLK>LDKDGKKILERKAKSRQVGKEKGKYKEETIEKMQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 12 .64 RPM |
SRP012922_cerebellum | 0 .00 RPM | 13 .33 RPM |
SRP012922_heart | 0 .00 RPM | 5 .34 RPM |
SRP012922_kidney | 5 .20 RPM | 10 .68 RPM |
SRP012922_liver | 0 .31 RPM | 6 .04 RPM |
SRP012922_lung | 0 .61 RPM | 16 .04 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 9 .17 RPM |
SRP012922_spleen | 0 .23 RPM | 13 .62 RPM |