RetrogeneDB ID:

retro_ogar_531

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873522.1:43068156..43068564(-)
Located in intron of:ENSOGAG00000015508
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ATP5G1
Ensembl ID:ENSOGAG00000011713
Aliases:None
Description:ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) [Source:HGNC Symbol;Acc:841]


Retrocopy-Parental alignment summary:






>retro_ogar_531
ATGCAGACCACCACAGCACTGCTCATTTCCCCGACTCTGATCCGCTGCTGTACGAGGGGTCTAATCAGACCTATGTCTGC
CTCCTTCCTGAGTAGGCCAGACAATTCATCTTAACAGCCTTCCTACAAAAGCTCCCCACTCTAGGTGGCCCAAAGGGAGT
TCCAGACCAGTGTTGTCTCCTGGGACATTGACACAGCAGCCAAGTTTATTGGTGCTGGGGCAGTCACAGTTGGTGTGGCT
GGTACAGGGGTTGGCACTGGAATGGTGTTTGGCAGCTTAATCACTGGCTATGCCTGGAACCTGTCTCTCAAGCAGCAGCT
CTTCTCCTATGCCTTTCTGGGCTTTGACCTGTCTGAGGCTATGGGGCTCTTCTGTTTGGTGGTCACCTTCCACATCCTAT
TCACCATG

ORF - retro_ogar_531 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 83.82 %
Parental protein coverage: 100. %
Number of stop codons detected: 2
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMQTTAALLISPTLIRCCTRGLIRPMSASFLNRPENSSKQPSYNSSPLQVARREFQTSVVSRDIDTAAKFI
MQTT.ALLISPTLIRCCTRGLIRPMSASFL.RP.NSS.QPSY.SSPL.VA.REFQTSVVS.DIDTAAKFI
RetrocopyMQTTTALLISPTLIRCCTRGLIRPMSASFLSRPDNSS*QPSYKSSPL*VAQREFQTSVVSWDIDTAAKFI
ParentalGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
GAGA.TVGVAG.G.G.G.VFGSLI.GYA.N.SLKQQLFSYA.LGF.LSEAMGLFCL.V.F.ILF.M
RetrocopyGAGAVTVGVAGTGVGTGMVFGSLITGYAWNLSLKQQLFSYAFLGFDLSEAMGLFCLVVTFHILFTM

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_531 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 14 parental genes, and 34 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000063411 retrocopy
Bos taurus ENSBTAG000000183393 retrocopies
Callithrix jacchus ENSCJAG000000073527 retrocopies
Cavia porcellus ENSCPOG000000090172 retrocopies
Macropus eugenii ENSMEUG000000057442 retrocopies
Macaca mulatta ENSMMUG000000133951 retrocopy
Oryctolagus cuniculus ENSOCUG000000162252 retrocopies
Otolemur garnettii ENSOGAG000000036114 retrocopies
Otolemur garnettii ENSOGAG00000011713 3 retrocopies
retro_ogar_1847, retro_ogar_2767, retro_ogar_531 ,
Otolemur garnettii ENSOGAG000000275781 retrocopy
Rattus norvegicus ENSRNOG000000072355 retrocopies
Sus scrofa ENSSSCG000000175441 retrocopy
Tursiops truncatus ENSTTRG000000085261 retrocopy
Vicugna pacos ENSVPAG000000076531 retrocopy



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