RetrogeneDB ID: | retro_cpor_43 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_11:17926053..17926464(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000020823 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000009017 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 98.53 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MQTTGALRLSPALIRCCTRGLIRPASASFLSRPQDPPKSPSSSAPQLQVARRDFQTSVVSRDIDTAAKFI |
MQTTGALRLSPALIRCCTRGLIRPASASFLSRPQDPPKSPSSSAPQLQVARRDFQTSVVS.DIDTAAKFI | |
Retrocopy | MQTTGALRLSPALIRCCTRGLIRPASASFLSRPQDPPKSPSSSAPQLQVARRDFQTSVVSQDIDTAAKFI |
Parental | GAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM |
GAGAATVGVAGSGAGI.TVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM | |
Retrocopy | GAGAATVGVAGSGAGIRTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 2 .76 RPM | 54 .18 RPM |
SRP017611_kidney | 14 .55 RPM | 182 .78 RPM |
SRP017611_liver | 4 .70 RPM | 79 .09 RPM |
SRP040447_lung | 0 .33 RPM | 38 .46 RPM |
SRP040447_skeletal_muscle | 4 .73 RPM | 269 .00 RPM |