RetrogeneDB ID: | retro_cjac_4060 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | X:46289237..46289641(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G1 | ||
Ensembl ID: | ENSCJAG00000007352 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) [Source:HGNC Symbol;Acc:841] |
Percent Identity: | 92.7 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MQTTGALLISPALIRCCTRGLIRPVSASFLNSPENSSKQPSSSSSPLQVARREFQTSVVSRDIDTAAKFI |
MQTTGALLISPALIRCCTRGLIRPVSAS.LN.PE.SSKQPSSSSSPLQVA.REFQTSV.SRDIDTAAKFI | |
Retrocopy | MQTTGALLISPALIRCCTRGLIRPVSAS-LNNPESSSKQPSSSSSPLQVA*REFQTSVASRDIDTAAKFI |
Parental | GAGAATVGVAGSGAGIGTVFGSLIIG-YARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM |
GAGAATVGVAGSGAGIGTVFGSLII..Y.RNPSLKQQLFSYAILGFALSEA.GLFCLMVAFLILF.M | |
Retrocopy | GAGAATVGVAGSGAGIGTVFGSLIIA<YSRNPSLKQQLFSYAILGFALSEATGLFCLMVAFLILFTM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 10 .05 RPM |
SRP051959_heart | 0 .02 RPM | 18 .93 RPM |
SRP051959_kidney | 0 .00 RPM | 11 .94 RPM |
SRP051959_liver | 0 .00 RPM | 11 .74 RPM |
SRP051959_lung | 0 .03 RPM | 4 .07 RPM |
SRP051959_lymph_node | 0 .09 RPM | 3 .79 RPM |
SRP051959_skeletal_muscle | 0 .04 RPM | 26 .14 RPM |
SRP051959_spleen | 0 .02 RPM | 4 .08 RPM |