Parental gene:

ATP5G1, ENSOCUG00000016225

Aliases:None
Description:ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) [Source:HGNC Symbol;Acc:841]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:19:38526417..38528887(-)


>ENSOCUG00000016225
ATGCAGGCCACCGGGTCGCTACTCATTTCTCCAGCTCTGGTCCGCTGTTGTACCAGGGGCCTACTCAGGCCTGTGTCTGC
CTCCTTCCTGAGCAGGCCAGAGGACTTGCCTAAACAGCCTCCCTGCAGCAGCTCCCCACTCCAGGTCGCCCGGCGGGAAT
TCCAGACCAGCGTTGTCTCCCGGGACATCGACACGGCGGCCAAGTTCATTGGTGCTGGGGCCGCCACAGTCGGCGTGGCT
GGCTCAGGAGCTGGCATCGGCACAGTGTTTGGCAGCTTGATCATTGGCTACGCCAGGAACCCGTCTCTCAAGCAGCAGCT
CTTCTCCTATGCCATTCTGGGCTTCGCGCTGTCCGAGGCCATGGGGCTCTTCTGTTTGATGGTCGCCTTCCTCATCCTCT
TCGCCATGTGA

Library Parental gene expression (RPM)
SRP017611_brain 100 .83 RPM
SRP017611_kidney 188 .42 RPM
SRP017611_liver 37 .61 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000006341 ortholog_one2many 1 retrogene
retro_acar_9,
Bos taurus ENSBTAG00000018339 ortholog_one2one 3 retrogenes
retro_btau_1506, retro_btau_423, retro_btau_431,
Callithrix jacchus ENSCJAG00000007352 possible_ortholog 7 retrogenes
retro_cjac_1190, retro_cjac_1549, retro_cjac_161, retro_cjac_1878, retro_cjac_289, retro_cjac_4060, retro_cjac_679,
Cavia porcellus ENSCPOG00000009017 ortholog_one2many 2 retrogenes
retro_cpor_43, retro_cpor_550,
Macropus eugenii ENSMEUG00000005744 ortholog_one2one 2 retrogenes
retro_meug_1650, retro_meug_1973,
Macaca mulatta ENSMMUG00000013395 possible_ortholog 1 retrogene
retro_mmul_173,
Oryctolagus cuniculus ENSOCUG00000008933 within_species_paralog 4 retrogenes
retro_ocun_1933, retro_ocun_450, retro_ocun_762, retro_ocun_794,
Oryctolagus cuniculus ENSOCUG00000012164 within_species_paralog 1 retrogene
retro_ocun_949,
Otolemur garnettii ENSOGAG00000011713 ortholog_one2one 3 retrogenes
retro_ogar_1847, retro_ogar_2767, retro_ogar_531,
Rattus norvegicus ENSRNOG00000007235 possible_ortholog 5 retrogenes
retro_rnor_1342, retro_rnor_2240, retro_rnor_529, retro_rnor_64, retro_rnor_880,
Sus scrofa ENSSSCG00000017544 ortholog_one2one 1 retrogene
retro_sscr_348,
Tursiops truncatus ENSTTRG00000008526 ortholog_one2one 1 retrogene
retro_ttru_279,
Vicugna pacos ENSVPAG00000007653 ortholog_one2one 1 retrogene
retro_vpac_282,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_346 94.85 100.00
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2. retro_ocun_375 90.11 66.18
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Download FASTA sequences of all ENSOCUG00000016225 retrocopies