RetrogeneDB ID: | retro_rnor_2240 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 5:105631746..105632102(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Atp5g1 | ||
Ensembl ID: | ENSRNOG00000007235 | ||
Aliases: | None | ||
Description: | ATP synthase lipid-binding protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q06645] |
Percent Identity: | 85. % |
Parental protein coverage: | 87.5 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MQTTKALLISPVLIRSCTRGLIRPVSASLLSRPEAPSK-KPSCCSSPLQVARREFQTSVISRDIDTAAKF |
MQT.KALL.SPVLIRSCTRGLI.PV.ASLL.RPEA.SK.KPSC.SSPLQVAR.EFQT..IS.D.D.AA.F | |
Retrocopy | MQTAKALLCSPVLIRSCTRGLISPVFASLLGRPEALSK<KPSCLSSPLQVARQEFQTCAISWDNDIAAEF |
Parental | IGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE |
IG.GAATVGVAGSGAG.GTVFGSLIIGYARNPS.KQQLFSYAILGFALSE | |
Retrocopy | IGPGAATVGVAGSGAGTGTVFGSLIIGYARNPSVKQQLFSYAILGFALSE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 64 .20 RPM |
SRP017611_kidney | 0 .00 RPM | 176 .20 RPM |
SRP017611_liver | 0 .00 RPM | 99 .11 RPM |