RetrogeneDB ID: | retro_mmul_173 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 5:46160712..46161120(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000003986 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2437 | ||
Ensembl ID: | ENSMMUG00000013395 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) [Source:RefSeq peptide;Acc:NP_001182424] |
Percent Identity: | 98.52 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MQTTGALLISPALIRCTRGLIRPVSASFLNSPVNSSKQPSYSSFPLQVARREFQTSVFSRDIDTAAKFIG |
MQTTGALLISPALI.CTRGLIRPVSASFLNSPVNSSKQPSYSSFPLQVARREFQTSV.SRDIDTAAKFIG | |
Retrocopy | MQTTGALLISPALIHCTRGLIRPVSASFLNSPVNSSKQPSYSSFPLQVARREFQTSVVSRDIDTAAKFIG |
Parental | AGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM |
AGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM | |
Retrocopy | AGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 3 .14 RPM | 14 .34 RPM |
SRP007412_brain_prefrontal_cortex | 3 .97 RPM | 32 .05 RPM |
SRP007412_cerebellum | 2 .78 RPM | 11 .04 RPM |
SRP007412_heart | 7 .83 RPM | 85 .80 RPM |
SRP007412_kidney | 9 .04 RPM | 34 .04 RPM |
SRP007412_liver | 9 .90 RPM | 31 .19 RPM |
SRP007412_testis | 0 .75 RPM | 9 .35 RPM |