RetrogeneDB ID: | retro_rnor_880 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 12:50343444..50343852(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000020112 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Atp5g1 | ||
Ensembl ID: | ENSRNOG00000007235 | ||
Aliases: | None | ||
Description: | ATP synthase lipid-binding protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q06645] |
Percent Identity: | 89.86 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MQTTKALLISPVLIRSCTRGLIRPVSASLLSRPEAPSKKPSCCSS-PLQVARREFQTSVISR-DIDTAAK |
MQTTKALLISPVLI.SCTRGLIR.VSASLLSRPEAPSKKPSCCSS.PLQV.R.EFQTSVISR.DIDTAAK | |
Retrocopy | MQTTKALLISPVLIHSCTRGLIRLVSASLLSRPEAPSKKPSCCSS<PLQVVRWEFQTSVISR>DIDTAAK |
Parental | FIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM |
FIG.GAATVGVAG.GAGIGT.FGSL.IGYARNPSLKQQLFS.AILGFALSEA.G.FCLMVAFLIL.AM | |
Retrocopy | FIGVGAATVGVAGPGAGIGTLFGSLTIGYARNPSLKQQLFSNAILGFALSEATGFFCLMVAFLILSAM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 64 .20 RPM |
SRP017611_kidney | 0 .00 RPM | 176 .20 RPM |
SRP017611_liver | 0 .00 RPM | 99 .11 RPM |