Parental gene:

HMGB1, ENSCHOG00000002423

Aliases:None
Description:high mobility group box 1 [Source:HGNC Symbol;Acc:4983]
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_26171:13249..15656(+)


>ENSCHOG00000002423
ATGGGCAAAGGGGACCCTAAGAAGCCGAGAGGCAAAATGTCATCATATGCCTTCTTCGTGCAAACCTGCCGGGAGGAGCA
CAAGAAGAAGCACCCGGACGCTTCCGTCAACTTTTCAGAGTTTTCTAAGAAGTGCTCAGAGAGGTGGAAGACTATGTCTG
CTAAAGAGAAAGGAAAATTTGAAGACATGGCCAAGGCGGACAAGGCCCGTTATGAAAGAGAAATGAAAACCTATATTCCT
CCTAAAGGGGAGACAAAAAAGAAGTTCAAGGATCCCAATGCACCCAAGAGGCCTCCTTCGGCCTTTTTCTTGTTTTGTTC
TGAGTATCGCCCAAAAATCAAAGGCGAGCATCCTGGCTTGTCCATTGGCGATGTTGCAAAGAAACTGGGAGAGATGTGGA
ATAATACCGCTGCGGATGACAAGCAGCCTTATGAAAAGAAGGCTGCCAAGCTGAAGGAGAAATACGAAAAGGATATTGCT
GCATACCGAGCTAAAGGAAAGCCTGATGCTGCAAAAAAGGGAGTTGTCAAGGCTGAGAAAAGCAAGAAAAAGAAGGAGGA
GGAGGAAGACGAAGAAGATGAGGAAGATGAGGAGGAAGAGGAAGAGGAAGAAGATGAAGATGAAGAAGATGATGATGATG
ATGAATAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000008880 possible_ortholog 7 retrogenes
Bos taurus ENSBTAG00000018103 possible_ortholog 2 retrogenes
Canis familiaris ENSCAFG00000006597 ortholog_one2one 13 retrogenes
Choloepus hoffmanni ENSCHOG00000005005 other_paralog 2 retrogenes
Callithrix jacchus ENSCJAG00000021615 possible_ortholog 11 retrogenes
Cavia porcellus ENSCPOG00000003985 possible_ortholog 1 retrogene
Equus caballus ENSECAG00000008439 possible_ortholog 2 retrogenes
Echinops telfairi ENSETEG00000004048 possible_ortholog 18 retrogenes
Felis catus ENSFCAG00000000200 possible_ortholog 10 retrogenes
Gorilla gorilla ENSGGOG00000026764 possible_ortholog 23 retrogenes
Loxodonta africana ENSLAFG00000000269 ortholog_one2one 4 retrogenes
Macropus eugenii ENSMEUG00000001380 possible_ortholog 2 retrogenes
Microcebus murinus ENSMICG00000000573 possible_ortholog 1 retrogene
Microcebus murinus ENSMICG00000007144 possible_ortholog 7 retrogenes
Macaca mulatta ENSMMUG00000023399 possible_ortholog 3 retrogenes
Monodelphis domestica ENSMODG00000009238 possible_ortholog 14 retrogenes
Oryctolagus cuniculus ENSOCUG00000021335 possible_ortholog 16 retrogenes
Otolemur garnettii ENSOGAG00000003205 possible_ortholog 104 retrogenes
retro_ogar_1008, retro_ogar_1043, retro_ogar_106, retro_ogar_1133, retro_ogar_123, retro_ogar_1232, retro_ogar_1296, retro_ogar_1299, retro_ogar_1330, retro_ogar_1386, retro_ogar_1398, retro_ogar_1399, retro_ogar_1421, retro_ogar_1423, retro_ogar_1424, retro_ogar_1431, retro_ogar_1461, retro_ogar_1560, retro_ogar_1571, retro_ogar_1585, retro_ogar_1597, retro_ogar_1600, retro_ogar_1607, retro_ogar_1628, retro_ogar_163, retro_ogar_1664, retro_ogar_1698, retro_ogar_17, retro_ogar_172, retro_ogar_1738, retro_ogar_1758, retro_ogar_1781, retro_ogar_1843, retro_ogar_1844, retro_ogar_1861, retro_ogar_1867, retro_ogar_1878, retro_ogar_1894, retro_ogar_1896, retro_ogar_198, retro_ogar_1991, retro_ogar_2136, retro_ogar_2165, retro_ogar_219, retro_ogar_2282, retro_ogar_2318, retro_ogar_2319, retro_ogar_2352, retro_ogar_2385, retro_ogar_2403, retro_ogar_2429, retro_ogar_2436, retro_ogar_2458, retro_ogar_250, retro_ogar_2559, retro_ogar_2598, retro_ogar_2615, retro_ogar_2618, retro_ogar_2730, retro_ogar_2777, retro_ogar_2778, retro_ogar_2814, retro_ogar_2824, retro_ogar_2836, retro_ogar_284, retro_ogar_2845, retro_ogar_2891, retro_ogar_2894, retro_ogar_2906, retro_ogar_2961, retro_ogar_3008, retro_ogar_3018, retro_ogar_3028, retro_ogar_304, retro_ogar_311, retro_ogar_3136, retro_ogar_317, retro_ogar_320, retro_ogar_3208, retro_ogar_3230, retro_ogar_3325, retro_ogar_3330, retro_ogar_3355, retro_ogar_3374, retro_ogar_3500, retro_ogar_422, retro_ogar_435, retro_ogar_511, retro_ogar_542, retro_ogar_547, retro_ogar_634, retro_ogar_663, retro_ogar_698, retro_ogar_716, retro_ogar_772, retro_ogar_778, retro_ogar_8, retro_ogar_835, retro_ogar_890, retro_ogar_904, retro_ogar_912, retro_ogar_918, retro_ogar_92, retro_ogar_933,
Otolemur garnettii ENSOGAG00000032147 possible_ortholog 1 retrogene
Ochotona princeps ENSOPRG00000003507 possible_ortholog 8 retrogenes
Pongo abelii ENSPPYG00000005546 possible_ortholog 35 retrogenes
Rattus norvegicus ENSRNOG00000029813 possible_ortholog 1 retrogene
Sorex araneus ENSSARG00000004470 ortholog_one2many 14 retrogenes
Sarcophilus harrisii ENSSHAG00000014034 possible_ortholog 2 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000000443 possible_ortholog 19 retrogenes
Tarsius syrichta ENSTSYG00000006328 possible_ortholog 7 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_chof_108 67.31 71.16
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2. retro_chof_148 74.03 71.16
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3. retro_chof_164 79.55 60.00
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4. retro_chof_443 80.00 80.47
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5. retro_chof_538 73.26 86.51
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6. retro_chof_591 69.52 85.58
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7. retro_chof_720 75.74 62.79
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8. retro_chof_795 68.07 54.88
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9. retro_chof_1130 71.17 50.70
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10. retro_chof_1214 77.85 67.91
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11. retro_chof_1708 69.89 86.51
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12. retro_chof_1741 77.01 80.93
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13. retro_chof_1764 65.97 87.44
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14. retro_chof_1797 77.60 84.65
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15. retro_chof_2155 77.27 60.00
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16. retro_chof_2484 76.27 81.86
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Download FASTA sequences of all ENSCHOG00000002423 retrocopies