RetrogeneDB ID: | retro_pcap_97 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | GeneScaffold_5963:16548..16935(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL29 | ||
Ensembl ID: | ENSPCAG00000009712 | ||
Aliases: | None | ||
Description: | ribosomal protein L29 [Source:HGNC Symbol;Acc:10331] |
Percent Identity: | 88.37 % |
Parental protein coverage: | 81.13 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAKSKNHTTHNQSRNWHRNGIKKPRSQRYESLKXVDPKFLRNMRFAKKHNKKGLKKMQANNAKAMDARVE |
MAKSK.HTTHNQSR.WHRNGIKKPRSQRY.SLK.VDPKF.RNM.FA.KHNKKGLKKMQ.NNAKAMDA.VE | |
Retrocopy | MAKSKDHTTHNQSRKWHRNGIKKPRSQRYASLKGVDPKFRRNMHFARKHNKKGLKKMQTNNAKAMDA*VE |
Parental | AIKTLVKPKEVKPKIPRGVNRKLSRLAYIAHPKFGKRARARIAKGLRLCRPKSKAKAKA |
AIKTLVKPKEVKPKIPRGVN.KLSRLAYIAHPKFGKRARARIAKG.RLCR.K.KAKA.. | |
Retrocopy | AIKTLVKPKEVKPKIPRGVNCKLSRLAYIAHPKFGKRARARIAKGFRLCRTKFKAKAQS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |