RetrogeneDB ID: | retro_ggor_312 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 1:148144050..148144514(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000162244 | ||
Ensembl ID: | ENSGGOG00000024691 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.54 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQANNAKAMSARAE |
MAKSKNHTTHNQS.KWHRNGIKKPR.QRYESLKGVDPKFLRNM.FAKK.NKKGLKKMQANNAKAMSAR.E | |
Retrocopy | MAKSKNHTTHNQS*KWHRNGIKKPRLQRYESLKGVDPKFLRNMGFAKKCNKKGLKKMQANNAKAMSARTE |
Parental | AIKALVKPKEVKPK-IPKGVSRKLDRLAYIAHPKLGKRARARIAKGLRLCRPKAKAKDQTKAQAAAPASV |
AIK.L.KPKEVKP...PKGVSRKL...AYI.HPKLGK.A.ARIAKGLRLC.PKAKAKDQTKAQAAAPASV | |
Retrocopy | AIKVLIKPKEVKPR<MPKGVSRKLNQFAYITHPKLGKHACARIAKGLRLCGPKAKAKDQTKAQAAAPASV |
Parental | PAQAPKGTQAPTKASE |
.AQAPK..QAPTK.SE | |
Retrocopy | SAQAPKDAQAPTKTSE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 66 .32 RPM |
SRP007412_cerebellum | 0 .04 RPM | 77 .85 RPM |
SRP007412_heart | 0 .00 RPM | 72 .36 RPM |
SRP007412_kidney | 0 .04 RPM | 226 .40 RPM |
SRP007412_liver | 0 .03 RPM | 240 .41 RPM |
SRP007412_testis | 3 .00 RPM | 154 .78 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_263 |
Pongo abelii | retro_pabe_404 |