Parental gene:

ENSCJAG00000005951

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:15:27737774..27740120(-)


>ENSCJAG00000005951
ATGGCCAAGTCCAAGAACCACACCACACACAACCAGTCCCGAAAATGGCACAGAAATGGTATCAAGAAACCCCGATCACA
AAGATACGAGTCTCTTAAGGGGGTGGACCCCAAGTTCCTGAGGAACATGCGCTTTGCCAAGAAGCACAACAAGAAGGGCC
TAAAGAAGATGCAGGCCAACAATGCCAAGGCCATGAGTGCACGAGCTGAGGCCATCAAGGCCCTCGTAAAGCCCAAGGAG
GTTAAGCCCAAGATCCCAAAGGGTGTCAGCCGCAAGCTCGATCGACTTGCCTACATTGCCCACCCCAAGCTTGGGAAGCG
TGCTCGGGCACGCATTGCCAAGGGGCTCAGGCTCTGCCGGCCAAAGGTCAAGGTCAAGGCCAAGGCCAAGGATCAAACCA
AGGCCCAGGCTTCAGCTCCAGTTTCAGTTCCAGCTCAGGCTCTCAAAGGTGCCCAGGCCCCTACAAAGGCTTCAGAATAG

Library Parental gene expression (RPM)
SRP051959_spleen 47 .52 RPM
SRP051959_skeletal_muscle 49 .77 RPM
SRP051959_lymph_node 58 .83 RPM
SRP051959_lung 36 .39 RPM
SRP051959_liver 52 .68 RPM
SRP051959_kidney 34 .61 RPM
SRP051959_heart 28 .49 RPM
SRP051959_colon 31 .79 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009163 possible_ortholog 6 retrogenes
Bos taurus ENSBTAG00000018628 possible_ortholog 1 retrogene
Cavia porcellus ENSCPOG00000011738 possible_ortholog 1 retrogene
Dasypus novemcinctus ENSDNOG00000000209 possible_ortholog 7 retrogenes
Equus caballus ENSECAG00000007397 possible_ortholog 2 retrogenes
Felis catus ENSFCAG00000001762 possible_ortholog 9 retrogenes
Homo sapiens ENSG00000162244 possible_ortholog 23 retrogenes
Gorilla gorilla ENSGGOG00000024691 possible_ortholog 16 retrogenes
Loxodonta africana ENSLAFG00000005757 possible_ortholog 5 retrogenes
Microcebus murinus ENSMICG00000002705 possible_ortholog 9 retrogenes
Myotis lucifugus ENSMLUG00000015088 possible_ortholog 14 retrogenes
Macaca mulatta ENSMMUG00000019248 possible_ortholog 2 retrogenes
Monodelphis domestica ENSMODG00000028750 ortholog_many2many 17 retrogenes
Mustela putorius furo ENSMPUG00000011734 possible_ortholog 6 retrogenes
Mus musculus ENSMUSG00000048758 possible_ortholog 3 retrogenes
Otolemur garnettii ENSOGAG00000013766 possible_ortholog 2 retrogenes
Ochotona princeps ENSOPRG00000008821 ortholog_one2many 10 retrogenes
Procavia capensis ENSPCAG00000009712 possible_ortholog 4 retrogenes
Pongo abelii ENSPPYG00000013818 possible_ortholog 21 retrogenes
Rattus norvegicus ENSRNOG00000011138 possible_ortholog 15 retrogenes
Sorex araneus ENSSARG00000013572 possible_ortholog 8 retrogenes
Sarcophilus harrisii ENSSHAG00000006854 ortholog_one2many 2 retrogenes
Sus scrofa ENSSSCG00000027573 possible_ortholog 7 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000020488 possible_ortholog 14 retrogenes
Tursiops truncatus ENSTTRG00000003514 possible_ortholog 5 retrogenes
Vicugna pacos ENSVPAG00000001282 possible_ortholog 29 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_29 98.11 100.00
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2. retro_cjac_73 91.19 100.00
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3. retro_cjac_96 95.60 100.00
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4. retro_cjac_135 82.64 90.57
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5. retro_cjac_160 98.11 100.00
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6. retro_cjac_241 96.23 100.00
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7. retro_cjac_331 98.74 100.00
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8. retro_cjac_348 95.03 100.00
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9. retro_cjac_358 94.97 100.00
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Download FASTA sequences of all ENSCJAG00000005951 retrocopies