Parental gene:

ENSSARG00000013572

Aliases:None
Description:None
Organism:Shrew (Sorex araneus)
Coordinates:scaffold_259665:39197..40951(+)


>ENSSARG00000013572
ATGGCCAAGTCCAAGAACCACACCACGCACAACCAGTCTCGAAAATGGCACAGAAATGGCATTAAGAAACCTCGGTCACA
GCGATATGAGTCTCTTAAAGGGGTGGACCCCAAATTCCTGAGGAACATGCGTTTTGCCAAAAAGCACAACAAGAAGGGCC
TGAAGAAGATGCAGGCCAATAATGCTAAGGCCATGAGCGCCCGTGCCGAGGCCATCAAGGCCCTGGTGAAGCCCAAGCAG
CCTAGGCCCGTGGTCACAAAGAAGAATAGTCGCAAGCTCAGTCGACTTGCGTATATCGCTCACCCCAGGCTTGGGAAAAA
TGCTCGTGCCCGAATTGCCAAGGGTCTCAGGCTTTGCCGGCCAAAAACCAAGGCCAAGGCTAAAACCAAGGTTCAAATGA
AGGCTAAAGCCAAGGCTACGGCTGCAGCTCCAGCACCAGCTCAAGCTTCCAAAGGTGCCCAGGCCCCTGCCAAGGCTCCC

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009163 possible_ortholog 6 retrogenes
Bos taurus ENSBTAG00000018628 possible_ortholog 1 retrogene
Callithrix jacchus ENSCJAG00000005951 possible_ortholog 9 retrogenes
Cavia porcellus ENSCPOG00000011738 ortholog_one2many 1 retrogene
Dasypus novemcinctus ENSDNOG00000000209 possible_ortholog 7 retrogenes
Equus caballus ENSECAG00000007397 possible_ortholog 2 retrogenes
Felis catus ENSFCAG00000001762 possible_ortholog 9 retrogenes
Homo sapiens ENSG00000162244 possible_ortholog 23 retrogenes
Gorilla gorilla ENSGGOG00000024691 possible_ortholog 16 retrogenes
Loxodonta africana ENSLAFG00000005757 possible_ortholog 5 retrogenes
Microcebus murinus ENSMICG00000002705 possible_ortholog 9 retrogenes
Myotis lucifugus ENSMLUG00000015088 possible_ortholog 14 retrogenes
Macaca mulatta ENSMMUG00000019248 possible_ortholog 2 retrogenes
Monodelphis domestica ENSMODG00000028750 ortholog_many2many 17 retrogenes
Mustela putorius furo ENSMPUG00000011734 possible_ortholog 6 retrogenes
Mus musculus ENSMUSG00000048758 ortholog_many2many 3 retrogenes
Otolemur garnettii ENSOGAG00000013766 possible_ortholog 2 retrogenes
Ochotona princeps ENSOPRG00000008821 possible_ortholog 10 retrogenes
Procavia capensis ENSPCAG00000009712 possible_ortholog 4 retrogenes
Pongo abelii ENSPPYG00000013818 possible_ortholog 21 retrogenes
Rattus norvegicus ENSRNOG00000011138 ortholog_many2many 15 retrogenes
Sarcophilus harrisii ENSSHAG00000006854 ortholog_one2many 2 retrogenes
Sus scrofa ENSSSCG00000027573 possible_ortholog 7 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000020488 ortholog_many2many 14 retrogenes
Tursiops truncatus ENSTTRG00000003514 possible_ortholog 5 retrogenes
Vicugna pacos ENSVPAG00000001282 possible_ortholog 29 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sara_53 90.08 75.62
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2. retro_sara_108 62.80 98.75
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3. retro_sara_309 79.53 78.12
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4. retro_sara_329 57.61 56.25
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5. retro_sara_347 100.00 75.62
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6. retro_sara_400 99.17 75.62
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7. retro_sara_637 73.98 76.88
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8. retro_sara_669 89.84 79.38
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Download FASTA sequences of all ENSSARG00000013572 retrocopies