Parental gene:

RPL29, ENSPPYG00000013818

Aliases:None
Description:ribosomal protein L29 [Source:HGNC Symbol;Acc:10331]
Organism:Orangutan (Pongo abelii)
Coordinates:3:94363603..94365820(+)


>ENSPPYG00000013818
ATGGCCAAGTCCAAGAACCACACCACACACAACCAGTCCCGAAAATGGCACAGAAATGGTATCAAGAAACCCCGATCACA
AAGATACGAATCTCTTAAGGGGGTGGACCCCAAGTTCCTGAGGAACATGCGCTTTGCCAAGAAGCACAACAAGAAGGGCC
TAAAGAAGATGCAGGCCAACAATGCCAAGGCCATGAGTGCACGTGCCGAGGCTATCAAGGCCCTCGTAAAGCCCAAGGAG
GTTAAGCCCAAGATCCCAAAGGGTGTCAGCCGCAAGCTTGATCGACTTGCCTACATTGCCCATCCCAAGCTTGGGAAGCG
TGCTCGTGCCCGTATTGCCAAGGGGCTCAGGCTGTGCCGGCCAAAGGCCAAGGCCAAGGATCAAACCAAGGCCCAGGCTG
CAGCTCCAGCTTCAGTTCCAGCTCAGGCTCCCAAAGGTGCCCAGGCCCCTACAAAGGCTTCAGAGTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 73 .76 RPM
SRP007412_cerebellum 64 .57 RPM
SRP007412_heart 102 .41 RPM
SRP007412_kidney 190 .89 RPM
SRP007412_liver 203 .35 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009163 possible_ortholog 6 retrogenes
retro_amel_1373, retro_amel_1740, retro_amel_345, retro_amel_379, retro_amel_686, retro_amel_913,
Bos taurus ENSBTAG00000018628 possible_ortholog 1 retrogene
retro_btau_982,
Callithrix jacchus ENSCJAG00000005951 possible_ortholog 9 retrogenes
retro_cjac_135, retro_cjac_160, retro_cjac_241, retro_cjac_29, retro_cjac_331, retro_cjac_348, retro_cjac_358, retro_cjac_73, retro_cjac_96,
Cavia porcellus ENSCPOG00000011738 possible_ortholog 1 retrogene
retro_cpor_1509,
Dasypus novemcinctus ENSDNOG00000000209 possible_ortholog 7 retrogenes
retro_dnov_1743, retro_dnov_1900, retro_dnov_1923, retro_dnov_1952, retro_dnov_2050, retro_dnov_2163, retro_dnov_2614,
Equus caballus ENSECAG00000007397 possible_ortholog 2 retrogenes
retro_ecab_766, retro_ecab_904,
Felis catus ENSFCAG00000001762 possible_ortholog 9 retrogenes
retro_fcat_1032, retro_fcat_1132, retro_fcat_1753, retro_fcat_1774, retro_fcat_1897, retro_fcat_249, retro_fcat_485, retro_fcat_687, retro_fcat_952,
Homo sapiens ENSG00000162244 ortholog_one2one 23 retrogenes
retro_hsap_1098, retro_hsap_1146, retro_hsap_123, retro_hsap_1283, retro_hsap_1406, retro_hsap_1587, retro_hsap_170, retro_hsap_1759, retro_hsap_2053, retro_hsap_2358, retro_hsap_263, retro_hsap_2772, retro_hsap_2899, retro_hsap_3201, retro_hsap_3289, retro_hsap_3316, retro_hsap_3511, retro_hsap_3562, retro_hsap_3951, retro_hsap_3998, retro_hsap_4304, retro_hsap_863, retro_hsap_882,
Gorilla gorilla ENSGGOG00000024691 ortholog_one2one 16 retrogenes
retro_ggor_1007, retro_ggor_1090, retro_ggor_1205, retro_ggor_1315, retro_ggor_1330, retro_ggor_142, retro_ggor_1480, retro_ggor_1929, retro_ggor_224, retro_ggor_2247, retro_ggor_254, retro_ggor_2684, retro_ggor_312, retro_ggor_715, retro_ggor_863, retro_ggor_892,
Loxodonta africana ENSLAFG00000005757 possible_ortholog 5 retrogenes
retro_lafr_164, retro_lafr_184, retro_lafr_257, retro_lafr_461, retro_lafr_831,
Microcebus murinus ENSMICG00000002705 possible_ortholog 9 retrogenes
retro_mmur_192, retro_mmur_198, retro_mmur_303, retro_mmur_446, retro_mmur_508, retro_mmur_519, retro_mmur_657, retro_mmur_816, retro_mmur_938,
Myotis lucifugus ENSMLUG00000015088 possible_ortholog 14 retrogenes
retro_mluc_1086, retro_mluc_1160, retro_mluc_134, retro_mluc_1377, retro_mluc_1699, retro_mluc_1955, retro_mluc_2228, retro_mluc_2522, retro_mluc_2523, retro_mluc_2575, retro_mluc_297, retro_mluc_421, retro_mluc_889, retro_mluc_915,
Macaca mulatta ENSMMUG00000019248 ortholog_one2many 2 retrogenes
retro_mmul_1352, retro_mmul_218,
Monodelphis domestica ENSMODG00000028750 ortholog_many2many 17 retrogenes
retro_mdom_1013, retro_mdom_1187, retro_mdom_1201, retro_mdom_1328, retro_mdom_1445, retro_mdom_1452, retro_mdom_1505, retro_mdom_1532, retro_mdom_1604, retro_mdom_1665, retro_mdom_1904, retro_mdom_35, retro_mdom_504, retro_mdom_589, retro_mdom_612, retro_mdom_639, retro_mdom_995,
Mustela putorius furo ENSMPUG00000011734 possible_ortholog 6 retrogenes
retro_mputfur_137, retro_mputfur_187, retro_mputfur_370, retro_mputfur_467, retro_mputfur_816, retro_mputfur_970,
Mus musculus ENSMUSG00000048758 possible_ortholog 3 retrogenes
retro_mmus_203, retro_mmus_231, retro_mmus_86,
Otolemur garnettii ENSOGAG00000013766 possible_ortholog 2 retrogenes
retro_ogar_290, retro_ogar_31,
Ochotona princeps ENSOPRG00000008821 ortholog_one2one 10 retrogenes
retro_opri_1166, retro_opri_277, retro_opri_373, retro_opri_535, retro_opri_607, retro_opri_69, retro_opri_700, retro_opri_877, retro_opri_983, retro_opri_99,
Procavia capensis ENSPCAG00000009712 possible_ortholog 4 retrogenes
retro_pcap_100, retro_pcap_101, retro_pcap_44, retro_pcap_97,
Rattus norvegicus ENSRNOG00000011138 possible_ortholog 15 retrogenes
retro_rnor_1045, retro_rnor_1158, retro_rnor_1161, retro_rnor_1422, retro_rnor_1702, retro_rnor_184, retro_rnor_1951, retro_rnor_2207, retro_rnor_2222, retro_rnor_2356, retro_rnor_2561, retro_rnor_338, retro_rnor_397, retro_rnor_63, retro_rnor_928,
Sorex araneus ENSSARG00000013572 possible_ortholog 8 retrogenes
retro_sara_108, retro_sara_309, retro_sara_329, retro_sara_347, retro_sara_400, retro_sara_53, retro_sara_637, retro_sara_669,
Sarcophilus harrisii ENSSHAG00000006854 ortholog_one2many 2 retrogenes
retro_shar_355, retro_shar_444,
Sus scrofa ENSSSCG00000027573 possible_ortholog 7 retrogenes
retro_sscr_179, retro_sscr_182, retro_sscr_205, retro_sscr_206, retro_sscr_207, retro_sscr_208, retro_sscr_720,
Ictidomys tridecemlineatus ENSSTOG00000020488 possible_ortholog 14 retrogenes
retro_itri_1345, retro_itri_1433, retro_itri_1482, retro_itri_1586, retro_itri_1664, retro_itri_1667, retro_itri_194, retro_itri_482, retro_itri_520, retro_itri_592, retro_itri_622, retro_itri_874, retro_itri_934, retro_itri_942,
Tursiops truncatus ENSTTRG00000003514 possible_ortholog 5 retrogenes
retro_ttru_1933, retro_ttru_213, retro_ttru_409, retro_ttru_449, retro_ttru_985,
Vicugna pacos ENSVPAG00000001282 possible_ortholog 29 retrogenes
retro_vpac_102, retro_vpac_110, retro_vpac_120, retro_vpac_148, retro_vpac_155, retro_vpac_176, retro_vpac_188, retro_vpac_199, retro_vpac_243, retro_vpac_264, retro_vpac_28, retro_vpac_302, retro_vpac_305, retro_vpac_317, retro_vpac_325, retro_vpac_40, retro_vpac_401, retro_vpac_41, retro_vpac_416, retro_vpac_453, retro_vpac_462, retro_vpac_481, retro_vpac_547, retro_vpac_575, retro_vpac_58, retro_vpac_60, retro_vpac_602, retro_vpac_636, retro_vpac_98,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_404 86.54 100.00
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2. retro_pabe_459 87.18 100.00
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3. retro_pabe_491 88.39 100.00
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4. retro_pabe_673 81.94 100.00
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5. retro_pabe_687 65.91 84.52
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6. retro_pabe_911 83.02 100.00
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7. retro_pabe_1062 60.14 93.55
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8. retro_pabe_1162 83.33 100.00
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9. retro_pabe_1306 83.33 100.00
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10. retro_pabe_1503 87.82 100.00
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11. retro_pabe_1714 86.54 100.00
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12. retro_pabe_1882 82.55 95.48
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13. retro_pabe_2125 58.71 99.35
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14. retro_pabe_2131 60.18 72.26
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15. retro_pabe_2398 58.11 94.84
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16. retro_pabe_2718 87.82 100.00
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17. retro_pabe_2952 83.44 100.00
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18. retro_pabe_3254 81.65 100.00
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19. retro_pabe_3284 85.26 100.00
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20. retro_pabe_3504 71.28 60.00
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21. retro_pabe_3525 70.21 60.00
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Download FASTA sequences of all ENSPPYG00000013818 retrocopies