RetrogeneDB ID: | retro_ggor_715 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 11:59907375..59907840(-) | ||
Located in intron of: | ENSGGOG00000005570 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000162244 | ||
Ensembl ID: | ENSGGOG00000024691 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.58 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQANNAKAMSARAE |
..KSKNHT.HNQS.KWHRNGIKKP.SQRYESLKGVDPKFL.NM.FAKKH.KKGLKKMQ.NNAKAMSA.A. | |
Retrocopy | ITKSKNHTKHNQSKKWHRNGIKKP*SQRYESLKGVDPKFLENMCFAKKHIKKGLKKMQVNNAKAMSAHAK |
Parental | AIKALVKPKEVKPKIPKGVSRKLDRLAYIAHPKLGKRARARIAKGLRLCRPKAKAKDQTKAQAAAPASVP |
AIKAL.KPKEVKPKIPK.VS.KLD.LAYIAH.K.GK.A.A...KGLR.C.PKAKAK.QTKAQAAAPASVP | |
Retrocopy | AIKALIKPKEVKPKIPKSVSNKLD*LAYIAHLKFGK*ALAHVVKGLRQCQPKAKAKGQTKAQAAAPASVP |
Parental | AQAPKGTQAPTKASE |
AQAPKG.QAPTK.SE | |
Retrocopy | AQAPKGAQAPTKTSE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 66 .32 RPM |
SRP007412_cerebellum | 0 .00 RPM | 77 .85 RPM |
SRP007412_heart | 0 .03 RPM | 72 .36 RPM |
SRP007412_kidney | 0 .04 RPM | 226 .40 RPM |
SRP007412_liver | 0 .03 RPM | 240 .41 RPM |
SRP007412_testis | 0 .00 RPM | 154 .78 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_673 |