RetrogeneDB ID: | retro_rnor_2062 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 4:135409455..135409782(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cdc42 | ||
Ensembl ID: | ENSRNOG00000013536 | ||
Aliases: | None | ||
Description: | Cell division control protein 42 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8CFN2] |
Percent Identity: | 73.39 % |
Parental protein coverage: | 57.07 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLA |
.FLVCFSVVSPSSF.NVKEKWVPE.THHC..TPFLL..TQ..LRDD..TIEKLAKNK.K.IT..TA.KL. | |
Retrocopy | IFLVCFSVVSPSSFKNVKEKWVPETTHHCSRTPFLLAATQMGLRDDLCTIEKLAKNKVKSITLKTADKLE |
Parental | RDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKS |
.DLKAVK...C..LTQK.LKNVF.EA.LAALEP.E..KS | |
Retrocopy | WDLKAVKNEDCCNLTQKWLKNVFLEATLAALEPLEARKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 120 .21 RPM |
SRP017611_kidney | 0 .00 RPM | 146 .40 RPM |
SRP017611_liver | 0 .00 RPM | 54 .33 RPM |