Parental gene:

UBE2D4, ENSSSCG00000016722

Aliases:None
Description:ubiquitin-conjugating enzyme E2D 4 (putative) [Source:HGNC Symbol;Acc:21647]
Organism:Pig (Sus scrofa)
Coordinates:18:53448349..53469535(-)


>ENSSSCG00000016722
ATGGCGCTGAAGCGGATCCAGAAGGAATTAACCGACTTGCAGAGGGACCCTCCTGCCCAGTGCTCCGCAGGACCTGTGGG
AGACGACTTGTTCCACTGGCAGGCCACCATCATGGGCCCGAACGACAGTCCCTACCAAGGAGGCGTTTTCTTCCTGACCA
TCCACTTTCCTACAGATTATCCTTTCAAGCCCCCCAAGGTCGCTTTCACAACCAAAATCTATCACCCCAACATCAACAGC
AATGGCAGCATCTGCCTTGACATCCTGCGCTCCCAGTGGTCTCCAGCGCTGACCGTGTCCAAAGTTCTCTTATCCATCTG
TTCTCTGCTCTGTGACCCCAACCCCGACGACCCTCTGGTGCCAGAGATAGCCCACACCTACAAGGCCGACAGAGAGAAGT
ACAACAGACTAGCGAGAGAGTGGACACAGAAATACGCCATGTAA

Library Parental gene expression (RPM)
SRP014902_placenta 9 .29 RPM
SRP014902_testis 15 .98 RPM
SRP018856_adipose 29 .85 RPM
SRP018288_kidney 18 .81 RPM
SRP018288_lung 25 .05 RPM
SRP018288_liver 5 .92 RPM
SRP018288_heart 32 .77 RPM
SRP035408_liver 7 .52 RPM
SRP035408_brain 31 .25 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000003997 ortholog_one2one 1 retrogene
retro_btau_1261,
Callithrix jacchus ENSCJAG00000007875 ortholog_one2one 4 retrogenes
retro_cjac_1660, retro_cjac_3666, retro_cjac_3882, retro_cjac_925,
Dipodomys ordii ENSDORG00000006888 ortholog_one2one 5 retrogenes
retro_dord_104, retro_dord_345, retro_dord_408, retro_dord_743, retro_dord_760,
Homo sapiens ENSG00000078967 ortholog_one2one 2 retrogenes
retro_hsap_452, retro_hsap_453,
Gorilla gorilla ENSGGOG00000003378 ortholog_one2one 3 retrogenes
retro_ggor_1843, retro_ggor_2936, retro_ggor_436,
Myotis lucifugus ENSMLUG00000011919 ortholog_one2one 3 retrogenes
retro_mluc_1826, retro_mluc_1827, retro_mluc_594,
Macaca mulatta ENSMMUG00000002410 ortholog_one2one 5 retrogenes
retro_mmul_1067, retro_mmul_1937, retro_mmul_2514, retro_mmul_2515, retro_mmul_531,
Nomascus leucogenys ENSNLEG00000003364 ortholog_one2one 3 retrogenes
retro_nleu_54, retro_nleu_876, retro_nleu_90,
Oryctolagus cuniculus ENSOCUG00000008900 ortholog_one2one 1 retrogene
retro_ocun_1058,
Pongo abelii ENSPPYG00000029727 ortholog_one2one 1 retrogene
retro_pabe_3573,
Sus scrofa ENSSSCG00000011209 other_paralog 2 retrogenes
retro_sscr_759, retro_sscr_961,
Sus scrofa ENSSSCG00000024306 within_species_paralog 1 retrogene
retro_sscr_783,
Sus scrofa ENSSSCG00000029822 within_species_paralog 4 retrogenes
retro_sscr_1016, retro_sscr_672, retro_sscr_673, retro_sscr_918,
Tupaia belangeri ENSTBEG00000003691 ortholog_one2one 9 retrogenes
retro_tbel_1273, retro_tbel_2535, retro_tbel_2782, retro_tbel_307, retro_tbel_367, retro_tbel_37, retro_tbel_4118, retro_tbel_4163, retro_tbel_4312,
Tarsius syrichta ENSTSYG00000000595 ortholog_one2one 14 retrogenes
retro_tsyr_1007, retro_tsyr_1145, retro_tsyr_1162, retro_tsyr_1314, retro_tsyr_1392, retro_tsyr_1415, retro_tsyr_1677, retro_tsyr_1694, retro_tsyr_1859, retro_tsyr_683, retro_tsyr_789, retro_tsyr_836, retro_tsyr_838, retro_tsyr_919,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_79 85.71 100.00
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2. retro_sscr_671 69.92 87.07
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Download FASTA sequences of all ENSSSCG00000016722 retrocopies