Parental gene:

CDC42, ENSSSCG00000003520

Aliases:None
Description:Sus scrofa cell division cycle 42 (GTP binding protein, 25kDa) (CDC42), mRNA. [Source:RefSeq mRNA;Acc:NM_001078680]
Organism:Pig (Sus scrofa)
Coordinates:6:74057268..74116824(+)


>ENSSSCG00000003520
ATGCAGACGATTAAGTGTGTTGTTGTGGGCGATGGTGCCGTTGGTAAAACATGTCTCCTGATATCCTACACGACAAACAA
ATTTCCATCTGAGTATGTACCGACTGTTTTTGACAACTATGCAGTCACAGTTATGATTGGTGGAGAGCCATATACTCTTG
GACTTTTTGATACTGCAGGGCAAGAGGATTATGACAGATTACGACCGCTGAGTTATCCACAAACAGATGTATTTCTAGTC
TGTTTTTCAGTGGTCTCTCCATCCTCGTTTGAAAATGTGAAAGAAAAGTGGGTGCCTGAGATAACTCACCACTGTCCAAA
GACTCCTTTCTTGCTCGTTGGGACCCAAATTGATCTCAGAGATGACCCCTCTACTATTGAGAAACTTGCCAAGAATAAAC
AGAAGCCTATCACTCCAGAGACTGCTGAAAAGCTGGCCCGTGACCTGAAGGCTGTCAAGTATGTGGAGTGTTCTGCACTC
ACACAGAAAGGCCTAAAGAATGTATTTGACGAAGCAATATTGGCTGCCCTGGAGCCTCCAGAACCGAAGAAGAGCCGCAG
GTGTGTGCTGCTATGA

Library Parental gene expression (RPM)
SRP014902_placenta 92 .12 RPM
SRP014902_testis 102 .12 RPM
SRP018856_adipose 184 .22 RPM
SRP018288_kidney 202 .63 RPM
SRP018288_lung 391 .32 RPM
SRP018288_liver 97 .07 RPM
SRP018288_heart 121 .17 RPM
SRP035408_liver 83 .05 RPM
SRP035408_brain 271 .27 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000014707 ortholog_one2many 5 retrogenes
retro_cfam_1587, retro_cfam_1970, retro_cfam_2189, retro_cfam_88, retro_cfam_89,
Choloepus hoffmanni ENSCHOG00000005306 possible_ortholog 10 retrogenes
retro_chof_103, retro_chof_1044, retro_chof_1195, retro_chof_1853, retro_chof_2055, retro_chof_2105, retro_chof_2331, retro_chof_2407, retro_chof_50, retro_chof_800,
Callithrix jacchus ENSCJAG00000005912 possible_ortholog 6 retrogenes
retro_cjac_1275, retro_cjac_1808, retro_cjac_1826, retro_cjac_2251, retro_cjac_751, retro_cjac_911,
Cavia porcellus ENSCPOG00000006543 possible_ortholog 4 retrogenes
retro_cpor_1168, retro_cpor_286, retro_cpor_33, retro_cpor_887,
Equus caballus ENSECAG00000019180 possible_ortholog 1 retrogene
retro_ecab_11,
Felis catus ENSFCAG00000004853 ortholog_one2many 4 retrogenes
retro_fcat_129, retro_fcat_1421, retro_fcat_1579, retro_fcat_896,
Homo sapiens ENSG00000070831 ortholog_one2one 6 retrogenes
retro_hsap_2775, retro_hsap_2968, retro_hsap_3028, retro_hsap_3404, retro_hsap_3848, retro_hsap_4013,
Myotis lucifugus ENSMLUG00000013365 ortholog_one2one 4 retrogenes
retro_mluc_1076, retro_mluc_1864, retro_mluc_2456, retro_mluc_905,
Monodelphis domestica ENSMODG00000016078 ortholog_one2one 3 retrogenes
retro_mdom_18, retro_mdom_181, retro_mdom_537,
Mustela putorius furo ENSMPUG00000015999 possible_ortholog 2 retrogenes
retro_mputfur_308, retro_mputfur_957,
Oryctolagus cuniculus ENSOCUG00000009986 possible_ortholog 1 retrogene
retro_ocun_60,
Otolemur garnettii ENSOGAG00000014261 possible_ortholog 1 retrogene
retro_ogar_131,
Sorex araneus ENSSARG00000005184 possible_ortholog 3 retrogenes
retro_sara_10, retro_sara_220, retro_sara_3,
Sus scrofa ENSSSCG00000008439 within_species_paralog 1 retrogene
retro_sscr_102,
Sus scrofa ENSSSCG00000021944 other_paralog 4 retrogenes
retro_sscr_40, retro_sscr_565, retro_sscr_582, retro_sscr_882,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_899 88.71 64.92
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Download FASTA sequences of all ENSSSCG00000003520 retrocopies