RetrogeneDB ID: | retro_tbel_124 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_1201:71739..72264(-) | ||
Located in intron of: | ENSTBEG00000008905 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GAPDHS | ||
Ensembl ID: | ENSTBEG00000008617 | ||
Aliases: | None | ||
Description: | glyceraldehyde-3-phosphate dehydrogenase, spermatogenic [Source:HGNC Symbol;Acc:24864] |
Percent Identity: | 63.43 % |
Parental protein coverage: | 67.83 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | LAPLVKVIHERFGIVEGLMTTVHSYTATQKTVDGPSKKAWRDGRGAHQNIIPASTGAASAVGKVIPELKG |
LA.L.KVIH....IVEGLMT.VH..TATQKTVDGPS...W..G....QNIIPASTG.A.AVGKV.PEL.G | |
Retrocopy | LALLAKVIHDSSDIVEGLMTIVHTITATQKTVDGPSGELWHGGHRTAQNIIPASTGTAKAVGKVVPELNG |
Parental | KLTGMAFRVPTPDVSVVDLTCRLAQPTPYSAIKEAVKAAAKGPLAGILAYTEDQVVSTDFVGDTHSSIFD |
KLTGMAFR.PT..VSVVDL.C..........IK..VK.A...PL..IL.Y...QVVS..F...THSS.FD | |
Retrocopy | KLTGMAFRAPTHSVSVVDLACLMEKTA**NDIKKVVK*ASQVPLKDILGYNKGQVVSCAFNSNTHSSTFD |
Parental | AKAGIALNDNFVKVISWYDNEYGYSHRVVDLIRYM |
A.AGIALND.FVK.IS.YDNE.GYS.RVVD....M | |
Retrocopy | ARAGIALNDHFVKLISQYDNEFGYSSRVVDFMVHM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |