RetrogeneDB ID: | retro_tbel_4346 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_77824:4118..4870(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GAPDHS | ||
Ensembl ID: | ENSTBEG00000008617 | ||
Aliases: | None | ||
Description: | glyceraldehyde-3-phosphate dehydrogenase, spermatogenic [Source:HGNC Symbol;Acc:24864] |
Percent Identity: | 56.86 % |
Parental protein coverage: | 98.06 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | EIPWKSVGSPYVV-ESTGVYLSLEAASEHISAGAQRVVICAPSPDAPMFVMGVNENDYNPGFMNIVSNAS |
.I.W......YVV.EST.V....E.A..H...GA.RV.I.APS.DA.MFVMG.N...Y......I..... | |
Retrocopy | KIRWGDADAEYVV>EST-VFITMEKAVAHLKGGAKRVIISAPSADALMFVMGMNHKKYDNSLKIISNASC |
Parental | CT-TNCLAPLVKVIHERFGIVEGLMTTVHSYTATQKTVDGPSKKAWRDGRGAHQNIIPASTGAASAVGKV |
.T.T.CL....KVIH..FGIVEGL.TTV...TAT.K.VDG.S.K.WRDG.GA.QNIIPASTGAA.AV.KV | |
Retrocopy | TT>TACLQ--AKVIHKSFGIVEGLTTTVCAITAT*KIVDGLSEKLWRDGHGAAQNIIPASTGAAKAVDKV |
Parental | IPELKGKLTGMAFRVPTPDVSVVDLTCRLAQPTPYSAIKEAVKAAAKGPLAGILAYTEDQVVSTDFVGDT |
I.EL.GKLT...F.VPTP.VSVVDLTC.......Y..IK..V..A..G.L..IL.Y...QV.S.DF..D. | |
Retrocopy | ILELNGKLTSVVFHVPTPNVSVVDLTCCREKTAKYNGIKKVV*QALQGSLKSILGYF*NQVISCDFNSDK |
Parental | HSSIFDAKAGIALNDNFVKVISWYDNEYGYSHRVVDLIRYMFSRD |
HSS.FDA.AGIA.ND.FVK.ISWYDNE.GYS.RVVDL.....S.. | |
Retrocopy | HSSTFDAGAGIAFNDHFVKLISWYDNEFGYSNRVVDLMVHIASKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |